RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 DBX1A6NMT0 343 aa10.06□□□□□ -0.8
VPS29-209ENST00000551655 H3BMM0 161 aa10.06□□□□□ -0.8
VPS29-209ENST00000551655 IGKV3-20P01619 116 aa10.06□□□□□ -0.8
VPS29-209ENST00000551655 P2RY1P47900 373 aa10.06□□□□□ -0.8
VPS29-209ENST00000551655 PPP5CP53041 499 aa10.06□□□□□ -0.8
VPS29-209ENST00000551655 DHRS2Q13268 280 aa10.06□□□□□ -0.8
VPS29-209ENST00000551655 SSX1Q16384 188 aa10.06□□□□□ -0.8
VPS29-209ENST00000551655 THOC7Q6I9Y2 204 aaKnown RBP10.06□□□□□ -0.8
VPS29-209ENST00000551655 HSD17B13Q7Z5P4 300 aaPredicted RBP10.06□□□□□ -0.8
VPS29-209ENST00000551655 SECTM1Q8WVN6 248 aa10.06□□□□□ -0.8
VPS29-209ENST00000551655 LRP1Q07954 4544 aaKnown RBP10.06□□□□□ -0.8
VPS29-209ENST00000551655 TEX48A0A1B0GUV7 120 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 HELTA6NFD8 242 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 SMIM9A6NGZ8 99 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 HPRT1P00492 218 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 PTHLHP12272 177 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 NUTF2P61970 127 aaKnown RBP10.05□□□□□ -0.8
VPS29-209ENST00000551655 GSG1LQ6UXU4 331 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 Q6ZSN1 163 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 MS4A15Q8N5U1 240 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 OR51H1Q8NH63 302 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 TMEM203Q969S6 136 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 AIFM2Q9BRQ8 373 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 Q9H8V8 135 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 RAB22AQ9UL26 194 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 OR51B2Q9Y5P1 312 aa10.05□□□□□ -0.8
VPS29-209ENST00000551655 LOC102723971A0A1B0GUV8 181 aa10.04□□□□□ -0.8
VPS29-209ENST00000551655 RBFOX2O43251 390 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS29-209ENST00000551655 GADD45AP24522 165 aa10.04□□□□□ -0.8
VPS29-209ENST00000551655 CCL18P55774 89 aa10.04□□□□□ -0.8
VPS29-209ENST00000551655 GDF5OSQ5U4N7 250 aa10.04□□□□□ -0.8
VPS29-209ENST00000551655 SSX7Q7RTT5 188 aa10.04□□□□□ -0.8
VPS29-209ENST00000551655 NANOGP1Q8N7R0 232 aa10.04□□□□□ -0.8
VPS29-209ENST00000551655 OR1P1Q8NH06 330 aa10.04□□□□□ -0.8
VPS29-209ENST00000551655 MOB3AQ96BX8 217 aa10.04□□□□□ -0.8
VPS29-209ENST00000551655 TXN2Q99757 166 aa10.04□□□□□ -0.8
VPS29-209ENST00000551655 TMEM231Q9H6L2 316 aa10.04□□□□□ -0.8
VPS29-209ENST00000551655 FAM229AH3BQW9 127 aa10.03□□□□□ -0.8
VPS29-209ENST00000551655 NPPCP23582 126 aa10.03□□□□□ -0.8
VPS29-209ENST00000551655 ZNF600Q6ZNG1 722 aa10.03□□□□□ -0.8
VPS29-209ENST00000551655 TMEM91Q6ZNR0 172 aa10.03□□□□□ -0.8
VPS29-209ENST00000551655 AHSA2Q719I0 299 aa10.03□□□□□ -0.8
VPS29-209ENST00000551655 NUDCD2Q8WVJ2 157 aa10.03□□□□□ -0.8
VPS29-209ENST00000551655 UHRF2Q96PU4 802 aa10.03□□□□□ -0.8
VPS29-209ENST00000551655 FGF2P09038 288 aa10.02□□□□□ -0.81
VPS29-209ENST00000551655 CTXN2P0C2S0 81 aa10.02□□□□□ -0.81
VPS29-209ENST00000551655 DTYMKP23919 212 aa10.02□□□□□ -0.81
VPS29-209ENST00000551655 ICAM4Q14773 271 aa10.02□□□□□ -0.81
VPS29-209ENST00000551655 SERTAD4-AS1Q5TG53 156 aa10.02□□□□□ -0.81
VPS29-209ENST00000551655 SYT8Q8NBV8 401 aa10.02□□□□□ -0.81
VPS29-209ENST00000551655 ZNF555Q8NEP9 628 aa10.02□□□□□ -0.81
VPS29-209ENST00000551655 CENPOQ9BU64 300 aa10.02□□□□□ -0.81
VPS29-209ENST00000551655 PTTG2Q9NZH5 202 aa10.02□□□□□ -0.81
VPS29-209ENST00000551655 A0A1W2PS18 150 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 MARCH11A6NNE9 402 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 PRM2P04554 102 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 HLA-DRB4P13762 266 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 LAIR2Q6ISS4 152 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 CNIH2Q6PI25 160 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 C1orf158Q8N1D5 194 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 OR13F1Q8NGS4 319 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 RNF141Q8WVD5 230 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 C9orf16Q9BUW7 83 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 Q9H3A6 140 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 PLEKHA2Q9HB19 425 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 PGPEP1Q9NXJ5 209 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 ZNF586Q9NXT0 402 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 PLA2G2DQ9UNK4 145 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 HLA-DRB4X5D2U9 266 aa10.01□□□□□ -0.81
VPS29-209ENST00000551655 KRTAP29-1A8MX34 341 aaPredicted RBP10□□□□□ -0.81
VPS29-209ENST00000551655 FAM90A26D6RGX4 464 aa10□□□□□ -0.81
VPS29-209ENST00000551655 F5H768 121 aa10□□□□□ -0.81
VPS29-209ENST00000551655 CRYBB3P26998 211 aa10□□□□□ -0.81
VPS29-209ENST00000551655 G6PCP35575 357 aa10□□□□□ -0.81
VPS29-209ENST00000551655 ERVK-16P61578 105 aa10□□□□□ -0.81
VPS29-209ENST00000551655 RPS25P62851 125 aaKnown RBP10□□□□□ -0.81
VPS29-209ENST00000551655 CATR1Q13166 79 aa10□□□□□ -0.81
VPS29-209ENST00000551655 TTC32Q5I0X7 151 aa10□□□□□ -0.81
VPS29-209ENST00000551655 OGFRL1Q5TC84 451 aaPredicted RBP10□□□□□ -0.81
VPS29-209ENST00000551655 Q6ZRN7 208 aaPredicted RBP10□□□□□ -0.81
VPS29-209ENST00000551655 ZNF709Q8N972 641 aa10□□□□□ -0.81
VPS29-209ENST00000551655 METTL26Q96S19 204 aa10□□□□□ -0.81
VPS29-209ENST00000551655 SLC35B3Q9H1N7 401 aa10□□□□□ -0.81
VPS29-209ENST00000551655 MRPL36Q9P0J6 103 aaKnown RBP10□□□□□ -0.81
VPS29-209ENST00000551655 ANXA10Q9UJ72 324 aa10□□□□□ -0.81
VPS29-209ENST00000551655 V9GY05 133 aa10□□□□□ -0.81
VPS29-209ENST00000551655 TMEM50AO95807 157 aa9.99□□□□□ -0.81
VPS29-209ENST00000551655 KRASP01116 189 aa9.99□□□□□ -0.81
VPS29-209ENST00000551655 HBE1P02100 147 aa9.99□□□□□ -0.81
VPS29-209ENST00000551655 DEFB130BP0DP73 79 aa9.99□□□□□ -0.81
VPS29-209ENST00000551655 DEFB130AP0DP74 79 aa9.99□□□□□ -0.81
VPS29-209ENST00000551655 CALRP27797 417 aaKnown RBP9.99□□□□□ -0.81
VPS29-209ENST00000551655 FCGR2CP31995 323 aa9.99□□□□□ -0.81
VPS29-209ENST00000551655 OR10A3P58181 314 aa9.99□□□□□ -0.81
VPS29-209ENST00000551655 LINC00315P59091 139 aa9.99□□□□□ -0.81
VPS29-209ENST00000551655 FXYD4P59646 89 aa9.99□□□□□ -0.81
VPS29-209ENST00000551655 CLINT1Q14677 625 aa9.99□□□□□ -0.81
VPS29-209ENST00000551655 USF2Q15853 346 aaPredicted RBP9.99□□□□□ -0.81
VPS29-209ENST00000551655 CDNFQ49AH0 187 aa9.99□□□□□ -0.81
VPS29-209ENST00000551655 AADACL3Q5VUY0 350 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms