RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 UBE2DNLQ8IWF7 75 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 LILRB2Q8N423 598 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 DMBX1Q8NFW5 382 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 ST8SIA2Q92186 375 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 DGCR14Q96DF8 476 aaKnown RBP7.53□□□□□ -1.2
VPS29-208ENST00000550267 HERC1Q15751 4861 aa7.52□□□□□ -1.2
VPS29-208ENST00000550267 IFITM5A6NNB3 132 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 C16orf90A8MZG2 172 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 CDK2AP2O75956 126 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 PTHLHP12272 177 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 TRAM1Q15629 374 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 TMEM41BQ5BJD5 291 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 SOHLH1Q5JUK2 328 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 HACD4Q5VWC8 232 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 MORN3Q6PF18 240 aaPredicted RBP7.52□□□□□ -1.21
VPS29-208ENST00000550267 Q6ZRM9 215 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 HSD17B13Q7Z5P4 300 aaPredicted RBP7.52□□□□□ -1.21
VPS29-208ENST00000550267 PACRGLQ8N7B6 248 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 OR1L8Q8NGR8 309 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 LSM10Q969L4 123 aaKnown RBP7.52□□□□□ -1.21
VPS29-208ENST00000550267 DCSTAMPQ9H295 470 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 NDUFA4L2Q9NRX3 87 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 ANXA10Q9UJ72 324 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 TBC1D24Q9ULP9 559 aa7.52□□□□□ -1.21
VPS29-208ENST00000550267 TMEM235A6NFC5 223 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 KNCNA6PVL3 124 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 PDCD5O14737 125 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 SSX5O60225 188 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 IFNA21P01568 189 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 IFNA17P01571 189 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 IGHV3-48P01763 117 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 CD74P04233 296 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 EIF4EP06730 217 aaKnown RBP7.51□□□□□ -1.21
VPS29-208ENST00000550267 FGF2P09038 288 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 SPP1P10451 314 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 PSMA1P25786 263 aaKnown RBP7.51□□□□□ -1.21
VPS29-208ENST00000550267 FCGR2CP31995 323 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 RPL11P62913 178 aaKnown RBP7.51□□□□□ -1.21
VPS29-208ENST00000550267 CATR1Q13166 79 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 ARL6IP1Q15041 203 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 MSMO1Q15800 293 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 CSNK1G2-AS1Q8NCQ2 148 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 OR13F1Q8NGS4 319 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 OR51H1Q8NH63 302 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 SLC25A46Q96AG3 418 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 C8orf49Q96NF6 230 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 NXF2Q9GZY0 626 aaKnown RBP7.51□□□□□ -1.21
VPS29-208ENST00000550267 VSIRQ9H7M9 311 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 TMEM14BQ9NUH8 114 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 RABAC1Q9UI14 185 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 NSG2Q9Y328 171 aa7.51□□□□□ -1.21
VPS29-208ENST00000550267 TRAV2A0A0B4J234 112 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 CD5P06127 495 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 MFAP4P55083 255 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 GNG2P59768 71 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 C1orf134Q5TEV5 83 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 UBE2UQ5VVX9 321 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 TOMM20LQ6UXN7 152 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 Q8N1X5 172 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 ZBTB34Q8NCN2 500 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 DUSP18Q8NEJ0 188 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 GINS3Q9BRX5 216 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 SLC5A7Q9GZV3 580 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 PLEKHA2Q9HB19 425 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 OR51B2Q9Y5P1 312 aa7.5□□□□□ -1.21
VPS29-208ENST00000550267 APOBP04114 4563 aaKnown RBP7.5□□□□□ -1.21
VPS29-208ENST00000550267 SMIM30A4D0T7 59 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 I3L2K1 104 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 MT-CO2P00403 227 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 PPYP01298 95 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 ZNF688P0C7X2 276 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 NPY1RP25929 384 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 FXYD4P59646 89 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 ARPC4P59998 168 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 ERVK-16P61578 105 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 MLLT11Q13015 90 aaPredicted RBP7.49□□□□□ -1.21
VPS29-208ENST00000550267 ACTL10Q5JWF8 245 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 AADACL3Q5VUY0 350 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 ZNF818PQ6ZRF7 136 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 TXN2Q99757 166 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 ACOT13Q9NPJ3 140 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 SCRT2Q9NQ03 307 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 C8orf4Q9NR00 106 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 SCN3BQ9NY72 215 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 COMMD9Q9P000 198 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 DNAH5Q8TE73 4624 aa7.49□□□□□ -1.21
VPS29-208ENST00000550267 TRAV1-2A0A0B4J238 106 aa7.48□□□□□ -1.21
VPS29-208ENST00000550267 MARCH11A6NNE9 402 aa7.48□□□□□ -1.21
VPS29-208ENST00000550267 K7EQG2 157 aa7.48□□□□□ -1.21
VPS29-208ENST00000550267 GNG7O60262 68 aa7.48□□□□□ -1.21
VPS29-208ENST00000550267 RAB3BP20337 219 aa7.48□□□□□ -1.21
VPS29-208ENST00000550267 RCN1Q15293 331 aa7.48□□□□□ -1.21
VPS29-208ENST00000550267 STXBP6Q8NFX7 210 aa7.48□□□□□ -1.21
VPS29-208ENST00000550267 OR1P1Q8NH06 330 aa7.48□□□□□ -1.21
VPS29-208ENST00000550267 TMEM56Q96MV1 263 aa7.48□□□□□ -1.21
VPS29-208ENST00000550267 MGLLQ99685 303 aa7.48□□□□□ -1.21
VPS29-208ENST00000550267 PUS1Q9Y606 427 aaKnown RBP eCLIP7.48□□□□□ -1.21
VPS29-208ENST00000550267 CASQ2O14958 399 aaPredicted RBP7.47□□□□□ -1.21
VPS29-208ENST00000550267 SNAPC5O75971 98 aa7.47□□□□□ -1.21
VPS29-208ENST00000550267 KRASP01116 189 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms