RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 H3BP45 60 aa16.43■□□□□ 0.22
VPS29-206ENST00000549578 K7EPK0 472 aa16.43■□□□□ 0.22
VPS29-206ENST00000549578 TMEM50AO95807 157 aa16.43■□□□□ 0.22
VPS29-206ENST00000549578 ATP5G2Q06055 141 aa16.43■□□□□ 0.22
VPS29-206ENST00000549578 Q6ZNX1 250 aa16.43■□□□□ 0.22
VPS29-206ENST00000549578 USMG5Q96IX5 58 aa16.43■□□□□ 0.22
VPS29-206ENST00000549578 THYN1Q9P016 225 aa16.43■□□□□ 0.22
VPS29-206ENST00000549578 U3KQ87 197 aa16.43■□□□□ 0.22
VPS29-206ENST00000549578 ANK2Q01484 3957 aa16.43■□□□□ 0.22
VPS29-206ENST00000549578 IGHV3-21A0A0B4J1V1 117 aa16.42■□□□□ 0.22
VPS29-206ENST00000549578 LRRC37A5PQ49AS3 106 aa16.42■□□□□ 0.22
VPS29-206ENST00000549578 C2orf83Q53S99 150 aa16.42■□□□□ 0.22
VPS29-206ENST00000549578 C8orf86Q6ZUL3 223 aa16.42■□□□□ 0.22
VPS29-206ENST00000549578 PINX1Q96BK5 328 aaKnown RBP16.42■□□□□ 0.22
VPS29-206ENST00000549578 MFSD2BA6NFX1 497 aa16.41■□□□□ 0.22
VPS29-206ENST00000549578 IGHV3-23P01764 117 aa16.41■□□□□ 0.22
VPS29-206ENST00000549578 PAX9P55771 341 aa16.41■□□□□ 0.22
VPS29-206ENST00000549578 CYCSP99999 105 aaKnown RBP16.41■□□□□ 0.22
VPS29-206ENST00000549578 EXOSC2Q13868 293 aaKnown RBP16.41■□□□□ 0.22
VPS29-206ENST00000549578 DEFB136Q30KP8 78 aa16.41■□□□□ 0.22
VPS29-206ENST00000549578 PVRIGQ6DKI7 326 aa16.41■□□□□ 0.22
VPS29-206ENST00000549578 C4orf3Q8WVX3 66 aa16.41■□□□□ 0.22
VPS29-206ENST00000549578 C15orf62A8K5M9 175 aa16.4■□□□□ 0.22
VPS29-206ENST00000549578 K7EIM0 57 aa16.4■□□□□ 0.22
VPS29-206ENST00000549578 SPANXN5Q5MJ07 72 aa16.4■□□□□ 0.22
VPS29-206ENST00000549578 SPATA3Q8NHX4 192 aa16.4■□□□□ 0.22
VPS29-206ENST00000549578 OR4C12Q96R67 309 aa16.4■□□□□ 0.22
VPS29-206ENST00000549578 RAB40CQ96S21 281 aa16.4■□□□□ 0.22
VPS29-206ENST00000549578 PSENENQ9NZ42 101 aa16.4■□□□□ 0.22
VPS29-206ENST00000549578 PAIP2BQ9ULR5 123 aaKnown RBP16.4■□□□□ 0.22
VPS29-206ENST00000549578 I3L521 148 aa16.4■□□□□ 0.22
VPS29-206ENST00000549578 IGHV3-48P01763 117 aa16.4■□□□□ 0.22
VPS29-206ENST00000549578 LGALS1P09382 135 aaKnown RBP16.4■□□□□ 0.22
VPS29-206ENST00000549578 PPP1R1CQ8WVI7 109 aa16.4■□□□□ 0.22
VPS29-206ENST00000549578 SMIM8Q96KF7 97 aa16.4■□□□□ 0.22
VPS29-206ENST00000549578 ANKRD34BA5PLL1 514 aa16.39■□□□□ 0.21
VPS29-206ENST00000549578 I3L2K1 104 aa16.39■□□□□ 0.21
VPS29-206ENST00000549578 MT-CO2P00403 227 aa16.39■□□□□ 0.21
VPS29-206ENST00000549578 ZNF343Q6P1L6 599 aa16.39■□□□□ 0.21
VPS29-206ENST00000549578 SCARB1Q8WTV0 552 aa16.39■□□□□ 0.21
VPS29-206ENST00000549578 CXorf58Q96LI9 332 aa16.39■□□□□ 0.21
VPS29-206ENST00000549578 DUX3Q96PT4 197 aa16.39■□□□□ 0.21
VPS29-206ENST00000549578 ZNF436Q9C0F3 470 aaPredicted RBP16.39■□□□□ 0.21
VPS29-206ENST00000549578 L7N2F9 121 aa16.38■□□□□ 0.21
VPS29-206ENST00000549578 CORTO00230 105 aa16.38■□□□□ 0.21
VPS29-206ENST00000549578 LY86O95711 162 aa16.38■□□□□ 0.21
VPS29-206ENST00000549578 IFNA4P05014 189 aa16.38■□□□□ 0.21
VPS29-206ENST00000549578 VAMP2P63027 116 aa16.38■□□□□ 0.21
VPS29-206ENST00000549578 EEF1AKMT3Q96AZ1 226 aa16.38■□□□□ 0.21
VPS29-206ENST00000549578 CCDC140Q96MF4 163 aa16.38■□□□□ 0.21
VPS29-206ENST00000549578 C11orf1Q9H5F2 150 aa16.38■□□□□ 0.21
VPS29-206ENST00000549578 FNDC4Q9H6D8 234 aaPredicted RBP16.38■□□□□ 0.21
VPS29-206ENST00000549578 STRAPQ9Y3F4 350 aaKnown RBP16.38■□□□□ 0.21
VPS29-206ENST00000549578 hCG_2014768A0A024R1R8 64 aa16.37■□□□□ 0.21
VPS29-206ENST00000549578 DEDDO75618 318 aa16.37■□□□□ 0.21
VPS29-206ENST00000549578 TRBV12-3P01733 135 aa16.37■□□□□ 0.21
VPS29-206ENST00000549578 OR8U8P0C7N1 319 aa16.37■□□□□ 0.21
VPS29-206ENST00000549578 OPRK1P41145 380 aa16.37■□□□□ 0.21
VPS29-206ENST00000549578 TAS2R30P59541 319 aa16.37■□□□□ 0.21
VPS29-206ENST00000549578 RPP30P78346 268 aaKnown RBP16.37■□□□□ 0.21
VPS29-206ENST00000549578 MLANAQ16655 118 aa16.37■□□□□ 0.21
VPS29-206ENST00000549578 NOXA1Q86UR1 476 aa16.37■□□□□ 0.21
VPS29-206ENST00000549578 RNASEH2CQ8TDP1 164 aaKnown RBP16.37■□□□□ 0.21
VPS29-206ENST00000549578 VN1R17PQ8TDU5 208 aa16.37■□□□□ 0.21
VPS29-206ENST00000549578 H0YIZ8 118 aa16.36■□□□□ 0.21
VPS29-206ENST00000549578 PVALBP20472 110 aaPredicted RBP16.36■□□□□ 0.21
VPS29-206ENST00000549578 ATP5IP56385 69 aaPredicted RBP16.36■□□□□ 0.21
VPS29-206ENST00000549578 RAB11AP62491 216 aa16.36■□□□□ 0.21
VPS29-206ENST00000549578 RUNX1Q01196 453 aa16.36■□□□□ 0.21
VPS29-206ENST00000549578 ZNF502Q8TBZ5 544 aa16.36■□□□□ 0.21
VPS29-206ENST00000549578 RAX2Q96IS3 184 aa16.36■□□□□ 0.21
VPS29-206ENST00000549578 OR5AC2Q9NZP5 309 aa16.36■□□□□ 0.21
VPS29-206ENST00000549578 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.35■□□□□ 0.21
VPS29-206ENST00000549578 TSC22D2O75157 780 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 MPC2O95563 127 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 CLEC19AQ6UXS0 136 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 ETV3LQ6ZN32 361 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 CHAC2Q8WUX2 184 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 C21orf62Q9NYP8 219 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 DNHD1Q96M86 4753 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 IGHV4OR15-8A0A075B7B6 117 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 A0A087WW49 117 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 TRBV7-1A0A0A6YYK4 115 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 TSPAN15O95858 294 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 RLN2P04090 185 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 GIPP09681 153 aaPredicted RBP16.35■□□□□ 0.21
VPS29-206ENST00000549578 BCAP31P51572 246 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 CAV2P51636 162 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 UBAC2Q8NBM4 344 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 OR11H1Q8NG94 326 aa16.35■□□□□ 0.21
VPS29-206ENST00000549578 MRPL36Q9P0J6 103 aaKnown RBP16.35■□□□□ 0.21
VPS29-206ENST00000549578 PEF1Q9UBV8 284 aaKnown RBP16.35■□□□□ 0.21
VPS29-206ENST00000549578 PPP5D1E7EU14 171 aa16.34■□□□□ 0.21
VPS29-206ENST00000549578 F8W735 103 aaPredicted RBP16.34■□□□□ 0.21
VPS29-206ENST00000549578 M0QZ24 198 aa16.34■□□□□ 0.21
VPS29-206ENST00000549578 CCL24O00175 119 aa16.34■□□□□ 0.21
VPS29-206ENST00000549578 CCNKO75909 580 aa16.34■□□□□ 0.21
VPS29-206ENST00000549578 METTL15P1P0C7V9 234 aa16.34■□□□□ 0.21
VPS29-206ENST00000549578 GPR183P32249 361 aa16.34■□□□□ 0.21
VPS29-206ENST00000549578 ACSM6Q6P461 480 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms