RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 SPINK9Q5DT21 86 aa12.84□□□□□ -0.35
CHMP1A-205ENST00000548650 RNASE12Q5GAN4 147 aaKnown RBP12.84□□□□□ -0.35
CHMP1A-205ENST00000548650 APRG1Q8IVJ8 170 aa12.84□□□□□ -0.35
CHMP1A-205ENST00000548650 STPG3Q8N7X2 389 aa12.84□□□□□ -0.35
CHMP1A-205ENST00000548650 GALNT14Q96FL9 552 aa12.84□□□□□ -0.35
CHMP1A-205ENST00000548650 ZNF486Q96H40 463 aaPredicted RBP12.84□□□□□ -0.35
CHMP1A-205ENST00000548650 MRPS26Q9BYN8 205 aaKnown RBP12.84□□□□□ -0.35
CHMP1A-205ENST00000548650 MAP6D1Q9H9H5 199 aa12.84□□□□□ -0.35
CHMP1A-205ENST00000548650 GNG7O60262 68 aa12.83□□□□□ -0.36
CHMP1A-205ENST00000548650 YIF1AO95070 293 aa12.83□□□□□ -0.36
CHMP1A-205ENST00000548650 ATF4P18848 351 aaPredicted RBP12.83□□□□□ -0.36
CHMP1A-205ENST00000548650 GPR107Q5VW38 600 aa12.83□□□□□ -0.36
CHMP1A-205ENST00000548650 FAM90A2PQ658T7 463 aa12.83□□□□□ -0.36
CHMP1A-205ENST00000548650 PINX1Q96BK5 328 aaKnown RBP12.83□□□□□ -0.36
CHMP1A-205ENST00000548650 TP53RKQ96S44 253 aa12.83□□□□□ -0.36
CHMP1A-205ENST00000548650 KLK11Q9UBX7 282 aa12.83□□□□□ -0.36
CHMP1A-205ENST00000548650 IGHV3OR16-13A0A075B7E8 117 aa12.82□□□□□ -0.36
CHMP1A-205ENST00000548650 IGHV3-74A0A0B4J1X5 117 aa12.82□□□□□ -0.36
CHMP1A-205ENST00000548650 INS-IGF2F8WCM5 200 aa12.82□□□□□ -0.36
CHMP1A-205ENST00000548650 GABARAPO95166 117 aa12.82□□□□□ -0.36
CHMP1A-205ENST00000548650 PGAM2P15259 253 aa12.82□□□□□ -0.36
CHMP1A-205ENST00000548650 RORCP51449 518 aa12.82□□□□□ -0.36
CHMP1A-205ENST00000548650 PIGPP57054 158 aa12.82□□□□□ -0.36
CHMP1A-205ENST00000548650 RNASE10Q5GAN6 216 aaKnown RBP12.82□□□□□ -0.36
CHMP1A-205ENST00000548650 ARRDC1Q8N5I2 433 aa12.82□□□□□ -0.36
CHMP1A-205ENST00000548650 OR52I2Q8NH67 350 aa12.82□□□□□ -0.36
CHMP1A-205ENST00000548650 A0A0B4J293 547 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 FAM25AB3EWG3 89 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 FAM25CB3EWG5 89 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 FAM25GB3EWG6 89 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 CD3DP04234 171 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 TBPP20226 339 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 TFPI2P48307 235 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 AKR1C2P52895 323 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 PPP5CP53041 499 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 ERHP84090 104 aaKnown RBP12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 CTF1Q16619 201 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 PVRIGQ6DKI7 326 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 TOMM20LQ6UXN7 152 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 SLC35G3Q8N808 338 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 AP3S1Q92572 193 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 ZFAND3Q9H8U3 227 aa12.81□□□□□ -0.36
CHMP1A-205ENST00000548650 IGKV3-7A0A075B6H7 116 aa12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 TRAV14DV4A0A0A6YYC5 116 aa12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 ST8SIA3O43173 380 aa12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 ALDH3B2P48448 385 aa12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 MZT2AQ6P582 158 aa12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 CEMP1Q6PRD7 247 aaPredicted RBP12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 GPR141Q7Z602 305 aa12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 OR4D10Q8NGI6 311 aa12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 ST8SIA2Q92186 375 aa12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 GINS3Q9BRX5 216 aa12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 C6orf62Q9GZU0 229 aaPredicted RBP12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 VSIRQ9H7M9 311 aa12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 EXTL2Q9UBQ6 330 aa12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 MTFP1Q9UDX5 166 aa12.8□□□□□ -0.36
CHMP1A-205ENST00000548650 C3orf85A0A1B0GTC6 90 aa12.79□□□□□ -0.36
CHMP1A-205ENST00000548650 RNASE2P10153 161 aaKnown RBP12.79□□□□□ -0.36
CHMP1A-205ENST00000548650 NPBWR1P48145 328 aa12.79□□□□□ -0.36
CHMP1A-205ENST00000548650 TCF24Q7RTU0 167 aa12.79□□□□□ -0.36
CHMP1A-205ENST00000548650 GBGT1Q8N5D6 347 aa12.79□□□□□ -0.36
CHMP1A-205ENST00000548650 ABHD1Q96SE0 405 aa12.79□□□□□ -0.36
CHMP1A-205ENST00000548650 PUS1Q9Y606 427 aaKnown RBP eCLIP12.79□□□□□ -0.36
CHMP1A-205ENST00000548650 A0A0G2JRQ6 117 aa12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 APOHP02749 345 aaPredicted RBP12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 CD74P04233 296 aa12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 ZNF182P17025 639 aaPredicted RBP12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 UCP1P25874 307 aa12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 SNCAP37840 140 aa12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 HOXA1P49639 335 aaPredicted RBP12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 ZNF600Q6ZNG1 722 aa12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 LILRB2Q8N423 598 aa12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 TMEM217Q8N7C4 229 aa12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 DUSP18Q8NEJ0 188 aa12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 OR13C8Q8NGS7 320 aa12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 MRPL36Q9P0J6 103 aaKnown RBP12.78□□□□□ -0.36
CHMP1A-205ENST00000548650 A0A1B0GU03 582 aa12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 CORTO00230 105 aa12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 ATG12O94817 140 aa12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 LY6G6CO95867 125 aa12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 IFNA17P01571 189 aa12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 CMC4P56277 68 aaPredicted RBP12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 TRIM16LQ309B1 348 aa12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 SP6Q3SY56 376 aa12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 CCDC71LQ8N9Z2 235 aa12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 GATAD1Q8WUU5 269 aa12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 CSTL1Q9H114 145 aa12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 FNDC4Q9H6D8 234 aaPredicted RBP12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 COPZ2Q9P299 210 aa12.77□□□□□ -0.37
CHMP1A-205ENST00000548650 IGHV3-66A0A0C4DH42 116 aa12.76□□□□□ -0.37
CHMP1A-205ENST00000548650 MPTX1A8MV57 137 aa12.76□□□□□ -0.37
CHMP1A-205ENST00000548650 CD5P06127 495 aa12.76□□□□□ -0.37
CHMP1A-205ENST00000548650 BSXQ3C1V8 233 aa12.76□□□□□ -0.37
CHMP1A-205ENST00000548650 CLVS1Q8IUQ0 354 aaPredicted RBP12.76□□□□□ -0.37
CHMP1A-205ENST00000548650 TMEM229BQ8NBD8 167 aa12.76□□□□□ -0.37
CHMP1A-205ENST00000548650 TERB2Q8NHR7 220 aa12.76□□□□□ -0.37
CHMP1A-205ENST00000548650 PDCD10Q9BUL8 212 aa12.76□□□□□ -0.37
CHMP1A-205ENST00000548650 MS4A6AQ9H2W1 248 aa12.76□□□□□ -0.37
CHMP1A-205ENST00000548650 MIXL1Q9H2W2 232 aa12.76□□□□□ -0.37
CHMP1A-205ENST00000548650 KMT2AQ03164 3969 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms