RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 PRAP1Q96NZ9 151 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 NAA38Q9BRA0 125 aaKnown RBP1.45□□□□□ -2.18
VPS29-205ENST00000548539 TRIM4Q9C037 500 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 CCDC90BQ9GZT6 254 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 UQCC1Q9NVA1 299 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 LHFPL6Q9Y693 200 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 NUP155O75694 1391 aa1.45□□□□□ -2.18
VPS29-205ENST00000548539 MAST2Q6P0Q8 1798 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 IGKV2-29A2NJV5 120 aaPredicted RBP1.44□□□□□ -2.18
VPS29-205ENST00000548539 TMEM212A6NML5 194 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 BUB1B-PAK6H3BSN5 160 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 FADS1O60427 444 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 CLPSP04118 112 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 SHBGP04278 402 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 RPSAP08865 295 aaKnown RBP1.44□□□□□ -2.18
VPS29-205ENST00000548539 CTXN2P0C2S0 81 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 METTL15P1P0C7V9 234 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 ANP32AP39687 249 aaKnown RBP1.44□□□□□ -2.18
VPS29-205ENST00000548539 CCL7P80098 99 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 SPA17Q15506 151 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 TMEM97Q5BJF2 176 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 OR52R1Q8NGF1 315 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 TERB2Q8NHR7 220 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 PFN4Q8NHR9 129 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 SLC39A9Q9NUM3 307 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 FBXO5Q9UKT4 447 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 ROBO3Q96MS0 1386 aa1.44□□□□□ -2.18
VPS29-205ENST00000548539 CCDC144AA2RUR9 1427 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 SETD5Q9C0A6 1442 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 GREB1Q4ZG55 1949 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 hCG_1818297A0A087WSY0 165 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 TRAPPC13A5PLN9 417 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 A8MT66 165 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 PDE6DO43924 150 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 IFNA10P01566 189 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 IFNA6P05013 189 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 SMIM17P0DL12 118 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 SMIM10L2AP0DMW4 78 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 SMIM10L2BP0DMW5 78 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 CDC42P60953 191 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 REEP5Q00765 189 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 IAH1Q2TAA2 248 aaPredicted RBP1.43□□□□□ -2.18
VPS29-205ENST00000548539 MIR17HGQ75NE6 70 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 GDPD1Q8N9F7 314 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 CT55Q8WUE5 264 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 SIGMAR1Q99720 223 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 IDI2-AS1Q9NZ38 188 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 CKLFQ9UBR5 152 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 CYSLTR1Q9Y271 337 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 ERGIC3Q9Y282 383 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 TONSLQ96HA7 1378 aa1.43□□□□□ -2.18
VPS29-205ENST00000548539 DOCK10Q96BY6 2186 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 IGKV1D-42A0A075B6H8 117 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 TMEM210A6NLX4 147 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 RBP1P09455 135 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 SPI1P17947 270 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 FKBP2P26885 142 aaKnown RBP1.42□□□□□ -2.18
VPS29-205ENST00000548539 ERVS71-1P61550 626 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 C12orf74Q32Q52 190 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 KHDC3LQ587J8 217 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 DPPA3Q6W0C5 159 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 Q6ZSA8 131 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 S100A7AQ86SG5 101 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 C15orf53Q8NAA6 179 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 OR5A1Q8NGJ0 315 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 OR51A2Q8NGJ7 313 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 YIPF3Q9GZM5 350 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 MALRD1Q5VYJ5 2156 aa1.42□□□□□ -2.18
VPS29-205ENST00000548539 PTPRBP23467 1997 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 MDC1Q14676 2089 aaKnown RBP1.41□□□□□ -2.18
VPS29-205ENST00000548539 ATP5HO75947 161 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 OR2J2O76002 312 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 HAND1O96004 215 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 HTR1AP08908 422 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 HIST1H3AP68431 136 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 H3F3AP84243 136 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 ZNF846Q147U1 533 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 CDK5R1Q15078 307 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 Q6ZQT0 140 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 RPS19BP1Q86WX3 136 aaKnown RBP1.41□□□□□ -2.18
VPS29-205ENST00000548539 OR6V1Q8N148 313 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 HIST3H2BBQ8N257 126 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 SLC25A40Q8TBP6 338 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 KIFC1Q9BW19 673 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 C20orf27Q9GZN8 174 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 COL4A1P02462 1669 aa1.41□□□□□ -2.18
VPS29-205ENST00000548539 GLI3P10071 1580 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 F8W036 122 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 ZNF682O95780 498 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 SERPINE1P05121 402 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 CTSDP07339 412 aaPredicted RBP1.4□□□□□ -2.19
VPS29-205ENST00000548539 S100A4P26447 101 aaKnown RBP1.4□□□□□ -2.19
VPS29-205ENST00000548539 G6PCP35575 357 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 LINC00471Q8N535 108 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 DEFB119Q8N690 84 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 SIGLECL1Q8N7X8 197 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 OR4E2Q8NGC2 313 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 CHMP6Q96FZ7 201 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 ADAT1Q9BUB4 502 aaKnown RBP1.4□□□□□ -2.19
VPS29-205ENST00000548539 TLNRD1Q9H1K6 362 aa1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms