RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 ODF3L2Q3SX64 289 aa9.75□□□□□ -0.85
RTN3-213ENST00000543552 SLC35G3Q8N808 338 aa9.75□□□□□ -0.85
RTN3-213ENST00000543552 PINX1Q96BK5 328 aaKnown RBP9.75□□□□□ -0.85
RTN3-213ENST00000543552 OR10C1Q96KK4 312 aa9.75□□□□□ -0.85
RTN3-213ENST00000543552 RHPN1-AS1Q9BWJ2 59 aa9.75□□□□□ -0.85
RTN3-213ENST00000543552 NXF2Q9GZY0 626 aaKnown RBP9.75□□□□□ -0.85
RTN3-213ENST00000543552 EPPK1P58107 5090 aaKnown RBP9.75□□□□□ -0.85
RTN3-213ENST00000543552 HYDINQ4G0P3 5121 aa9.75□□□□□ -0.85
RTN3-213ENST00000543552 PLECQ15149 4684 aaKnown RBP9.74□□□□□ -0.85
RTN3-213ENST00000543552 TRAV14DV4A0A0A6YYC5 116 aa9.74□□□□□ -0.85
RTN3-213ENST00000543552 B3GALNT1O75752 331 aa9.74□□□□□ -0.85
RTN3-213ENST00000543552 IGKV1-39P01597 117 aa9.74□□□□□ -0.85
RTN3-213ENST00000543552 IGKV1D-39P04432 117 aa9.74□□□□□ -0.85
RTN3-213ENST00000543552 ATF4P18848 351 aaPredicted RBP9.74□□□□□ -0.85
RTN3-213ENST00000543552 SUB1P53999 127 aaKnown RBP eCLIP9.74□□□□□ -0.85
RTN3-213ENST00000543552 PIGPP57054 158 aa9.74□□□□□ -0.85
RTN3-213ENST00000543552 CCDC71LQ8N9Z2 235 aa9.74□□□□□ -0.85
RTN3-213ENST00000543552 DUSP18Q8NEJ0 188 aa9.74□□□□□ -0.85
RTN3-213ENST00000543552 ZFAND1Q8TCF1 268 aa9.74□□□□□ -0.85
RTN3-213ENST00000543552 RNF2Q99496 336 aa9.74□□□□□ -0.85
RTN3-213ENST00000543552 COPZ2Q9P299 210 aa9.74□□□□□ -0.85
RTN3-213ENST00000543552 A0A0J9YWU9 116 aa9.73□□□□□ -0.85
RTN3-213ENST00000543552 CHEK1O14757 476 aa9.73□□□□□ -0.85
RTN3-213ENST00000543552 IFNA17P01571 189 aa9.73□□□□□ -0.85
RTN3-213ENST00000543552 ZNF182P17025 639 aaPredicted RBP9.73□□□□□ -0.85
RTN3-213ENST00000543552 TRIM16LQ309B1 348 aa9.73□□□□□ -0.85
RTN3-213ENST00000543552 LYG2Q86SG7 212 aa9.73□□□□□ -0.85
RTN3-213ENST00000543552 LHFPL1Q86WI0 220 aa9.73□□□□□ -0.85
RTN3-213ENST00000543552 RNASE11Q8TAA1 199 aaKnown RBP9.73□□□□□ -0.85
RTN3-213ENST00000543552 RNF183Q96D59 192 aa9.73□□□□□ -0.85
RTN3-213ENST00000543552 RRNAD1Q96FB5 475 aaKnown RBP9.73□□□□□ -0.85
RTN3-213ENST00000543552 TMEM231Q9H6L2 316 aa9.73□□□□□ -0.85
RTN3-213ENST00000543552 ENY2Q9NPA8 101 aa9.73□□□□□ -0.85
RTN3-213ENST00000543552 EXTL2Q9UBQ6 330 aa9.73□□□□□ -0.85
RTN3-213ENST00000543552 C3orf85A0A1B0GTC6 90 aa9.72□□□□□ -0.85
RTN3-213ENST00000543552 INS-IGF2F8WCM5 200 aa9.72□□□□□ -0.85
RTN3-213ENST00000543552 GABARAPO95166 117 aa9.72□□□□□ -0.85
RTN3-213ENST00000543552 CD3DP04234 171 aa9.72□□□□□ -0.85
RTN3-213ENST00000543552 RPL35AP18077 110 aaKnown RBP9.72□□□□□ -0.85
RTN3-213ENST00000543552 HOXA1P49639 335 aaPredicted RBP9.72□□□□□ -0.85
RTN3-213ENST00000543552 TAS2R19P59542 299 aa9.72□□□□□ -0.85
RTN3-213ENST00000543552 PMS2P11Q13670 270 aa9.72□□□□□ -0.85
RTN3-213ENST00000543552 RNASE12Q5GAN4 147 aaKnown RBP9.72□□□□□ -0.85
RTN3-213ENST00000543552 OR52I2Q8NH67 350 aa9.72□□□□□ -0.85
RTN3-213ENST00000543552 MAP6D1Q9H9H5 199 aa9.72□□□□□ -0.85
RTN3-213ENST00000543552 KLK11Q9UBX7 282 aa9.72□□□□□ -0.85
RTN3-213ENST00000543552 MTFP1Q9UDX5 166 aa9.72□□□□□ -0.85
RTN3-213ENST00000543552 KLK5Q9Y337 293 aaPredicted RBP9.72□□□□□ -0.85
RTN3-213ENST00000543552 IGKV1-5P01602 117 aa9.71□□□□□ -0.86
RTN3-213ENST00000543552 PI3P19957 117 aa9.71□□□□□ -0.86
RTN3-213ENST00000543552 TFPI2P48307 235 aa9.71□□□□□ -0.86
RTN3-213ENST00000543552 PPP5CP53041 499 aa9.71□□□□□ -0.86
RTN3-213ENST00000543552 MRPS10P82664 201 aaKnown RBP9.71□□□□□ -0.86
RTN3-213ENST00000543552 SSBP1Q04837 148 aaKnown RBP9.71□□□□□ -0.86
RTN3-213ENST00000543552 ZNF600Q6ZNG1 722 aa9.71□□□□□ -0.86
RTN3-213ENST00000543552 TMEM229BQ8NBD8 167 aa9.71□□□□□ -0.86
RTN3-213ENST00000543552 TERB2Q8NHR7 220 aa9.71□□□□□ -0.86
RTN3-213ENST00000543552 GATAD1Q8WUU5 269 aa9.71□□□□□ -0.86
RTN3-213ENST00000543552 TP53RKQ96S44 253 aa9.71□□□□□ -0.86
RTN3-213ENST00000543552 BIRC6Q9NR09 4857 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 IGHV3-49A0A0A0MS15 119 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 A0A0B4J293 547 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 MPTX1A8MV57 137 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 ST8SIA3O43173 380 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 DFFBO76075 338 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 RAB3DO95716 219 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 IGHV3-48P01763 117 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 P0C879 139 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 MEF2DQ14814 521 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 CTF1Q16619 201 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 SCGB2B2Q4G0G5 96 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 SPINK9Q5DT21 86 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 TOMM20LQ6UXN7 152 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 TCF24Q7RTU0 167 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 APRG1Q8IVJ8 170 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 FAM219AQ8IW50 185 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 LINC00476Q8WZB0 136 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 NARS2Q96I59 477 aaKnown RBP9.7□□□□□ -0.86
RTN3-213ENST00000543552 CSTL1Q9H114 145 aa9.7□□□□□ -0.86
RTN3-213ENST00000543552 C14orf166Q9Y224 244 aaKnown RBP9.7□□□□□ -0.86
RTN3-213ENST00000543552 IGKV3-7A0A075B6H7 116 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 TRAV2A0A0B4J234 112 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 A0A1W2PS18 150 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 GABARAPH6UMI1 98 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 DNASE2O00115 360 aaPredicted RBP9.69□□□□□ -0.86
RTN3-213ENST00000543552 RGS5O15539 181 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 CD74P04233 296 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 UCP1P25874 307 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 OPRK1P41145 380 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 RPL11P62913 178 aaKnown RBP9.69□□□□□ -0.86
RTN3-213ENST00000543552 IZUMO4Q1ZYL8 232 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 GPR107Q5VW38 600 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 FAM90A2PQ658T7 463 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 STEAP1BQ6NZ63 245 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 CEMP1Q6PRD7 247 aaPredicted RBP9.69□□□□□ -0.86
RTN3-213ENST00000543552 OR13C8Q8NGS7 320 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 VSIRQ9H7M9 311 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 CACFD1Q9UGQ2 172 aa9.69□□□□□ -0.86
RTN3-213ENST00000543552 PUS1Q9Y606 427 aaKnown RBP eCLIP9.69□□□□□ -0.86
RTN3-213ENST00000543552 IGHV3OR16-13A0A075B7E8 117 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms