RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 PRR32B1ATL7 298 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 FAM71F2Q6NXP2 309 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 DKK4Q9UBT3 224 aa11.76□□□□□ -0.53
COLCA1-204ENST00000540738 BUB1B-PAK6H3BSN5 160 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 MLNRO43193 412 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 MFAP2P55001 183 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 HERPUD1Q15011 391 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 SPSB3Q6PJ21 355 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 TMEM144Q7Z5S9 345 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 C9orf62Q8N4C0 152 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.75□□□□□ -0.53
COLCA1-204ENST00000540738 MPZP25189 248 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 SAA4P35542 130 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 GATA4P43694 442 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 DEFB121Q5J5C9 76 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 PRB1P04280 392 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 LEPP41159 167 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 CACNA1DQ01668 2161 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 ZNF56Q15929 161 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 PRSS8Q16651 343 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 C5orf64Q2M2E5 130 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 STPG2Q8N412 459 aa11.75□□□□□ -0.53
COLCA1-204ENST00000540738 H3BTX0 84 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 PSPNO60542 156 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 APCSP02743 223 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 SHISA3A0PJX4 238 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 GCGP01275 180 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 GCHFRP30047 84 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 ZNF324BQ6AW86 544 aaPredicted RBP11.74□□□□□ -0.53
COLCA1-204ENST00000540738 HEATR1Q9H583 2144 aaKnown RBP11.74□□□□□ -0.53
COLCA1-204ENST00000540738 USF3Q68DE3 2245 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 H3BQ15 152 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 ASIPP42127 132 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 SIGIRRQ6IA17 410 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 RNF125Q96EQ8 232 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 FAM208BQ5VWN6 2430 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 IGFBP2P18065 325 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 C11orf91Q3C1V1 193 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 OR52E5Q8NH55 327 aa11.74□□□□□ -0.53
COLCA1-204ENST00000540738 IGHV1-69DA0A0B4J2H0 117 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 CBY3A6NI87 242 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 IGHV1-69P01742 117 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 DPH3Q96FX2 82 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 NPCDR1Q9BY65 106 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 LINC00527Q9UJ94 153 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 GBF1Q92538 1859 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 PKDREJQ9NTG1 2253 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 TRGV2A0A075B6R0 118 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 TMEM218A2RU14 115 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 HSPB1P04792 205 aaKnown RBP11.73□□□□□ -0.53
COLCA1-204ENST00000540738 HTN3P15516 51 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 AWAT1Q58HT5 328 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 OR1P1Q8NH06 330 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 C2CD4CQ8TF44 421 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 IGKV1D-13A0A0B4J2D9 117 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 M0R2Z0 102 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 TCF21O43680 179 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 IGKV1-13P0DP09 117 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 CKS2P33552 79 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 LYPD2Q6UXB3 125 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 KLHL30-AS1Q8NEE0 82 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 PACRGQ96M98 296 aaPredicted RBP11.73□□□□□ -0.53
COLCA1-204ENST00000540738 IGKV1D-17A0A075B6S4 117 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 IGHV2-70DA0A0C4DH43 119 aa11.73□□□□□ -0.53
COLCA1-204ENST00000540738 MT-ND6P03923 174 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 FAM74A4Q5TZK3 123 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 FAM24BQ8N5W8 94 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 TMEM191AQ9H0A3 160 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 SNRNP200O75643 2136 aaKnown RBP11.72□□□□□ -0.53
COLCA1-204ENST00000540738 TRAF4Q9BUZ4 470 aaPredicted RBP11.72□□□□□ -0.53
COLCA1-204ENST00000540738 IER3P46695 156 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 DEFB113Q30KQ7 82 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 ZNF585BQ52M93 769 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 KCNS1Q96KK3 526 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 HSPB8Q9UJY1 196 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 CRYBB3P26998 211 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 DLX1P56177 255 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 DEFA6Q01524 100 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 PAPPA-AS1Q5QFB9 102 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 PIP4P2Q8N4L2 257 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 CYB561D1Q8N8Q1 229 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 RTBDNQ9BSG5 229 aaPredicted RBP11.72□□□□□ -0.53
COLCA1-204ENST00000540738 FANCMQ8IYD8 2048 aa11.72□□□□□ -0.53
COLCA1-204ENST00000540738 IGHV3OR16-8A0A075B7F1 116 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 IGLV1-44P01699 117 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 SDF2L1Q9HCN8 221 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 IGKV1-27A0A075B6S5 117 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 RPL13AP40429 203 aaKnown RBP11.71□□□□□ -0.53
COLCA1-204ENST00000540738 MAP1LC3CQ9BXW4 147 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 FREM3P0C091 2139 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 TRBV6-6A0A0A6YYG2 114 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 TRBV7-1A0A0A6YYK4 115 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 C9JCJ5 164 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 CD55P08174 381 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 EFNB1P98172 346 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 C15orf32Q32M92 178 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 CLRN3Q8NCR9 226 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 SGMS2Q8NHU3 365 aa11.71□□□□□ -0.53
COLCA1-204ENST00000540738 MAPK1IP1LQ8NDC0 245 aa11.71□□□□□ -0.54
COLCA1-204ENST00000540738 MIEN1Q9BRT3 115 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms