RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 TNFRSF14Q92956 283 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 HARBI1Q96MB7 349 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 NABP2Q9BQ15 211 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 BET1LQ9NYM9 111 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 KIAA1456Q9P272 454 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 ZNF257Q9Y2Q1 563 aa9.56□□□□□ -0.88
CLIP1-208ENST00000537004 IGHV2-26A0A0B4J1V2 119 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 TRAV1-1A0A0B4J248 108 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 GATCO43716 136 aaKnown RBP9.55□□□□□ -0.88
CLIP1-208ENST00000537004 RBP4P02753 201 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 S100A6P06703 90 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 IL3RAP26951 378 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 RAB2AP61019 212 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 TMEM41BQ5BJD5 291 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 ETV3LQ6ZN32 361 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 PDPNQ86YL7 162 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 TGIF2LXQ8IUE1 241 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 OR4C13Q8NGP0 309 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 TMEM170AQ8WVE7 144 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 FLYWCH2Q96CP2 140 aaKnown RBP9.55□□□□□ -0.88
CLIP1-208ENST00000537004 NPCDR1Q9BY65 106 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 ENY2Q9NPA8 101 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 GSN-AS1Q9NRJ2 163 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 RBFOX3A6NFN3 312 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 KBTBD11O94819 623 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 HBE1P02100 147 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 MDKP21741 143 aaPredicted RBP9.55□□□□□ -0.88
CLIP1-208ENST00000537004 PAX6P26367 422 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 RAB5BP61020 215 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 RCC1LQ96I51 464 aaKnown RBP9.55□□□□□ -0.88
CLIP1-208ENST00000537004 RARRES2Q99969 163 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 TCEAL7Q9BRU2 100 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 HINT2Q9BX68 163 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 WASHC3Q9Y3C0 194 aa9.55□□□□□ -0.88
CLIP1-208ENST00000537004 PRSS46E5RG02 174 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 IGLV1-47P01700 117 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 CD1BP29016 333 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 PRRX1P54821 245 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 RAB11AP62491 216 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 PRCDQ00LT1 54 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 ZNF726P1Q15940 193 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 C12orf54Q6X4T0 127 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 SSX7Q7RTT5 188 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 KIR3DL3Q8N743 410 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 SLC24A4Q8NFF2 622 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 RXFP4Q8TDU9 374 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 CLEC7AQ9BXN2 247 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 OR51M1Q9H341 326 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 PLEKHA3Q9HB20 300 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 FKBP11Q9NYL4 201 aa9.54□□□□□ -0.88
CLIP1-208ENST00000537004 TEX50A0A1B0GTY4 177 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 TMEM89A2RUT3 159 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 IGHV4-59P01825 116 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 OPN1MWP04001 364 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 RNASE1P07998 156 aaKnown RBP9.53□□□□□ -0.88
CLIP1-208ENST00000537004 OPN1MW2P0DN77 364 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 OPN1MW3P0DN78 364 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 S100PP25815 95 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 NPY1RP25929 384 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 HAGHQ16775 308 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 HLA-DRB5Q30154 266 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 HCP5Q6MZN7 132 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 ACSM6Q6P461 480 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 Q6YL49 198 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 ZNF709Q8N972 641 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 MBD3L1Q8WWY6 194 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 GGACTQ9BVM4 153 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 SLC35B3Q9H1N7 401 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 SMDT1Q9H4I9 107 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 PRDM13Q9H4Q3 707 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 WDR83OSQ9Y284 106 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 hCG_1809904A0A1W2PP81 198 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 A0A1W2PPE2 198 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 A0A1W2PR64 198 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 A0A1W2PRV1 198 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 SMCO3A2RU48 225 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 FAM181BA6NEQ2 426 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 C17orf112F2Z3M2 114 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 UBE2CO00762 179 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 IGKV1D-33P01593 117 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 IGKV1-33P01594 117 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 MC5RP33032 325 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 NPBWR1P48145 328 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 BPIFB3P59826 476 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 DLK1P80370 383 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 LCN15Q6UWW0 184 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 OR5B3Q8NH48 314 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 C2CD4CQ8TF44 421 aa9.53□□□□□ -0.88
CLIP1-208ENST00000537004 MGAM2Q2M2H8 2515 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 C5orf52A6NGY3 159 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 CLDN34H7C241 214 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 M0R1W7 72 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 HAX1O00165 279 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 NPFFO15130 113 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 CA2P00918 260 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 IGLV2-23P01705 113 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 COX7A1P24310 79 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 SAA4P35542 130 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 RPL8P62917 257 aaKnown RBP9.52□□□□□ -0.89
CLIP1-208ENST00000537004 AWAT1Q58HT5 328 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms