RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 PDCD10Q9BUL8 212 aa9.76□□□□□ -0.85
RTN3-207ENST00000536011 UBQLN2Q9UHD9 624 aa9.76□□□□□ -0.85
RTN3-207ENST00000536011 SMPXQ9UHP9 88 aa9.76□□□□□ -0.85
RTN3-207ENST00000536011 ALMS1Q8TCU4 4167 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 IGHV3OR16-8A0A075B7F1 116 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 IGHV7-4-1A0A0J9YVY3 117 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 CXorf65A6NEN9 183 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 NUPR2A6NF83 97 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 I3L2K1 104 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 M0QYG6 137 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 CORTO00230 105 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 ZNF207O43670 478 aaKnown RBP9.75□□□□□ -0.85
RTN3-207ENST00000536011 SCGB2A1O75556 95 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 MT-CO2P00403 227 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 CTSDP07339 412 aaPredicted RBP9.75□□□□□ -0.85
RTN3-207ENST00000536011 SNCAP37840 140 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 NPBWR1P48145 328 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 PAFAH1B2P68402 229 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 TNFRSF9Q07011 255 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 DEFB135Q30KP9 77 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 ODF3L2Q3SX64 289 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 SLC35G3Q8N808 338 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 PINX1Q96BK5 328 aaKnown RBP9.75□□□□□ -0.85
RTN3-207ENST00000536011 OR10C1Q96KK4 312 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 RHPN1-AS1Q9BWJ2 59 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 NXF2Q9GZY0 626 aaKnown RBP9.75□□□□□ -0.85
RTN3-207ENST00000536011 EPPK1P58107 5090 aaKnown RBP9.75□□□□□ -0.85
RTN3-207ENST00000536011 HYDINQ4G0P3 5121 aa9.75□□□□□ -0.85
RTN3-207ENST00000536011 PLECQ15149 4684 aaKnown RBP9.74□□□□□ -0.85
RTN3-207ENST00000536011 TRAV14DV4A0A0A6YYC5 116 aa9.74□□□□□ -0.85
RTN3-207ENST00000536011 B3GALNT1O75752 331 aa9.74□□□□□ -0.85
RTN3-207ENST00000536011 IGKV1-39P01597 117 aa9.74□□□□□ -0.85
RTN3-207ENST00000536011 IGKV1D-39P04432 117 aa9.74□□□□□ -0.85
RTN3-207ENST00000536011 ATF4P18848 351 aaPredicted RBP9.74□□□□□ -0.85
RTN3-207ENST00000536011 SUB1P53999 127 aaKnown RBP eCLIP9.74□□□□□ -0.858e-14■■□□□ 13.4
RTN3-207ENST00000536011 PIGPP57054 158 aa9.74□□□□□ -0.85
RTN3-207ENST00000536011 CCDC71LQ8N9Z2 235 aa9.74□□□□□ -0.85
RTN3-207ENST00000536011 DUSP18Q8NEJ0 188 aa9.74□□□□□ -0.85
RTN3-207ENST00000536011 ZFAND1Q8TCF1 268 aa9.74□□□□□ -0.85
RTN3-207ENST00000536011 RNF2Q99496 336 aa9.74□□□□□ -0.85
RTN3-207ENST00000536011 COPZ2Q9P299 210 aa9.74□□□□□ -0.85
RTN3-207ENST00000536011 A0A0J9YWU9 116 aa9.73□□□□□ -0.85
RTN3-207ENST00000536011 CHEK1O14757 476 aa9.73□□□□□ -0.85
RTN3-207ENST00000536011 IFNA17P01571 189 aa9.73□□□□□ -0.85
RTN3-207ENST00000536011 ZNF182P17025 639 aaPredicted RBP9.73□□□□□ -0.85
RTN3-207ENST00000536011 TRIM16LQ309B1 348 aa9.73□□□□□ -0.85
RTN3-207ENST00000536011 LYG2Q86SG7 212 aa9.73□□□□□ -0.85
RTN3-207ENST00000536011 LHFPL1Q86WI0 220 aa9.73□□□□□ -0.85
RTN3-207ENST00000536011 RNASE11Q8TAA1 199 aaKnown RBP9.73□□□□□ -0.85
RTN3-207ENST00000536011 RNF183Q96D59 192 aa9.73□□□□□ -0.85
RTN3-207ENST00000536011 RRNAD1Q96FB5 475 aaKnown RBP9.73□□□□□ -0.85
RTN3-207ENST00000536011 TMEM231Q9H6L2 316 aa9.73□□□□□ -0.85
RTN3-207ENST00000536011 ENY2Q9NPA8 101 aa9.73□□□□□ -0.85
RTN3-207ENST00000536011 EXTL2Q9UBQ6 330 aa9.73□□□□□ -0.85
RTN3-207ENST00000536011 C3orf85A0A1B0GTC6 90 aa9.72□□□□□ -0.85
RTN3-207ENST00000536011 INS-IGF2F8WCM5 200 aa9.72□□□□□ -0.85
RTN3-207ENST00000536011 GABARAPO95166 117 aa9.72□□□□□ -0.85
RTN3-207ENST00000536011 CD3DP04234 171 aa9.72□□□□□ -0.85
RTN3-207ENST00000536011 RPL35AP18077 110 aaKnown RBP9.72□□□□□ -0.85
RTN3-207ENST00000536011 HOXA1P49639 335 aaPredicted RBP9.72□□□□□ -0.85
RTN3-207ENST00000536011 TAS2R19P59542 299 aa9.72□□□□□ -0.85
RTN3-207ENST00000536011 PMS2P11Q13670 270 aa9.72□□□□□ -0.85
RTN3-207ENST00000536011 RNASE12Q5GAN4 147 aaKnown RBP9.72□□□□□ -0.85
RTN3-207ENST00000536011 OR52I2Q8NH67 350 aa9.72□□□□□ -0.85
RTN3-207ENST00000536011 MAP6D1Q9H9H5 199 aa9.72□□□□□ -0.85
RTN3-207ENST00000536011 KLK11Q9UBX7 282 aa9.72□□□□□ -0.85
RTN3-207ENST00000536011 MTFP1Q9UDX5 166 aa9.72□□□□□ -0.85
RTN3-207ENST00000536011 KLK5Q9Y337 293 aaPredicted RBP9.72□□□□□ -0.85
RTN3-207ENST00000536011 IGKV1-5P01602 117 aa9.71□□□□□ -0.86
RTN3-207ENST00000536011 PI3P19957 117 aa9.71□□□□□ -0.86
RTN3-207ENST00000536011 TFPI2P48307 235 aa9.71□□□□□ -0.86
RTN3-207ENST00000536011 PPP5CP53041 499 aa9.71□□□□□ -0.86
RTN3-207ENST00000536011 MRPS10P82664 201 aaKnown RBP9.71□□□□□ -0.86
RTN3-207ENST00000536011 SSBP1Q04837 148 aaKnown RBP9.71□□□□□ -0.86
RTN3-207ENST00000536011 ZNF600Q6ZNG1 722 aa9.71□□□□□ -0.86
RTN3-207ENST00000536011 TMEM229BQ8NBD8 167 aa9.71□□□□□ -0.86
RTN3-207ENST00000536011 TERB2Q8NHR7 220 aa9.71□□□□□ -0.86
RTN3-207ENST00000536011 GATAD1Q8WUU5 269 aa9.71□□□□□ -0.86
RTN3-207ENST00000536011 TP53RKQ96S44 253 aa9.71□□□□□ -0.86
RTN3-207ENST00000536011 BIRC6Q9NR09 4857 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 IGHV3-49A0A0A0MS15 119 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 A0A0B4J293 547 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 MPTX1A8MV57 137 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 ST8SIA3O43173 380 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 DFFBO76075 338 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 RAB3DO95716 219 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 IGHV3-48P01763 117 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 P0C879 139 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 MEF2DQ14814 521 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 CTF1Q16619 201 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 SCGB2B2Q4G0G5 96 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 SPINK9Q5DT21 86 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 TOMM20LQ6UXN7 152 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 TCF24Q7RTU0 167 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 APRG1Q8IVJ8 170 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 FAM219AQ8IW50 185 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 LINC00476Q8WZB0 136 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 NARS2Q96I59 477 aaKnown RBP9.7□□□□□ -0.86
RTN3-207ENST00000536011 CSTL1Q9H114 145 aa9.7□□□□□ -0.86
RTN3-207ENST00000536011 C14orf166Q9Y224 244 aaKnown RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms