RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 PSMG4Q5JS54 123 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 SLC25A24Q6NUK1 477 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 RPL22L1Q6P5R6 122 aaKnown RBP4.44□□□□□ -1.7
CD44-237ENST00000534082 AQP12AQ8IXF9 295 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 CADM3Q8N126 398 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 ARHGAP24Q8N264 748 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 OR10W1Q8NGF6 305 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 RAB40CQ96S21 281 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 AIFM2Q9BRQ8 373 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 UPK3BQ9BT76 320 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 TM2D1Q9BX74 207 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 GABARAPL3Q9BY60 117 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 KCNK15Q9H427 330 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 HSF4Q9ULV5 492 aa4.44□□□□□ -1.7
CD44-237ENST00000534082 A0A087WTM6 91 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 A0A1W2PPK0 400 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 F5H768 121 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 L7N2F9 121 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 SOCS1O15524 211 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 HBE1P02100 147 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 SLPIP03973 132 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 UNC119Q13432 240 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 TIMM50Q3ZCQ8 353 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 Q499Y3 187 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 CCDC58Q4VC31 144 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 OGFRL1Q5TC84 451 aaPredicted RBP4.43□□□□□ -1.7
CD44-237ENST00000534082 MEDAGQ5VYS4 303 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 ZNF773Q6PK81 442 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 DCANP1Q8TF63 244 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 SMIM19Q96E16 107 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 RNF125Q96EQ8 232 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 UHRF2Q96PU4 802 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 SLC29A1Q99808 456 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 CMSS1Q9BQ75 279 aaKnown RBP4.43□□□□□ -1.7
CD44-237ENST00000534082 GINS4Q9BRT9 223 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 QTRT1Q9BXR0 403 aaKnown RBP4.43□□□□□ -1.7
CD44-237ENST00000534082 NXF2Q9GZY0 626 aaKnown RBP4.43□□□□□ -1.7
CD44-237ENST00000534082 GABARAPL1Q9H0R8 117 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 TMEM231Q9H6L2 316 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 BET1LQ9NYM9 111 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 EXTL2Q9UBQ6 330 aa4.43□□□□□ -1.7
CD44-237ENST00000534082 HELTA6NFD8 242 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 SNTNA6NMZ2 147 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 G3V2T6 193 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 H3BMM0 161 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 DIRAS3O95661 229 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 HRASP01112 189 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 S100A9P06702 114 aaKnown RBP4.42□□□□□ -1.7
CD44-237ENST00000534082 SERPINE2P07093 398 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 OR13C7P0DN81 318 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 CD36P16671 472 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 FXYD7P58549 80 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 TAS2R43P59537 309 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 RPS11P62280 158 aaKnown RBP eCLIP4.42□□□□□ -1.7
CD44-237ENST00000534082 POLR2GP62487 172 aaKnown RBP eCLIP4.42□□□□□ -1.7
CD44-237ENST00000534082 WT1-ASQ06250 92 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 ODF1Q14990 250 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 TOMM20LQ6UXN7 152 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 TCTEX1D2Q8WW35 142 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 TRUB1Q8WWH5 349 aaKnown RBP4.42□□□□□ -1.7
CD44-237ENST00000534082 COMMD5Q9GZQ3 224 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 MAGT1Q9H0U3 335 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 HRASLSQ9HDD0 168 aa4.42□□□□□ -1.7
CD44-237ENST00000534082 MRPS16Q9Y3D3 137 aaKnown RBP4.42□□□□□ -1.7
CD44-237ENST00000534082 F11RQ9Y624 299 aaKnown RBP4.42□□□□□ -1.7
CD44-237ENST00000534082 IGLV5-52A0A0A0MRZ9 124 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 TRAV3A0A0B4J244 114 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 FOXI3A8MTJ6 420 aaPredicted RBP4.41□□□□□ -1.7
CD44-237ENST00000534082 TMEM14DPA8MWL7 114 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 J3QRK9 145 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 FCGR3AP08637 254 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 LIMS3P0CW19 117 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 LIMS4P0CW20 117 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 DEFB130BP0DP73 79 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 DEFB130AP0DP74 79 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 HLA-DRB4P13762 266 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 BRWD1-AS2P59051 145 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 VBP1P61758 197 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 SUMO1P63165 101 aaKnown RBP4.41□□□□□ -1.7
CD44-237ENST00000534082 DHRS2Q13268 280 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 SSX1Q16384 188 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 NDUFA5Q16718 116 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 RNF151Q2KHN1 245 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 RRN3P1Q2M238 152 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 KCTD21Q4G0X4 260 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 YIF1BQ5BJH7 314 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 TTC23Q5W5X9 447 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 WDR73Q6P4I2 378 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 H1FOOQ8IZA3 346 aaPredicted RBP4.41□□□□□ -1.7
CD44-237ENST00000534082 OR52I1Q8NGK6 324 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 MAFIPQ8WZ33 124 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 ARHGAP5-AS1Q96IT6 56 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 Q96MT0 163 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 CLUHP3Q96NS8 147 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 DERL3Q96Q80 235 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 LPAR5Q9H1C0 372 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 C8orf4Q9NR00 106 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 RBMX2Q9Y388 322 aaKnown RBP4.41□□□□□ -1.7
CD44-237ENST00000534082 GOLT1BQ9Y3E0 138 aa4.41□□□□□ -1.7
CD44-237ENST00000534082 HLA-DRB4X5D2U9 266 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms