RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 SPANXN4Q5MJ08 99 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 OR4C11Q6IEV9 310 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 FBXL22Q6P050 247 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 Q6ZVH6 145 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 ASCL5Q7RTU5 278 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 SPATA12Q7Z6I5 190 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 ZFP62Q8NB50 900 aaPredicted RBP4.51□□□□□ -1.69
CD44-231ENST00000531110 ACER1Q8TDN7 264 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 APOBEC4Q8WW27 367 aaKnown RBP4.51□□□□□ -1.69
CD44-231ENST00000531110 PPDPFLQ8WWR9 84 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 CRYGNQ8WXF5 182 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 ARPC1AQ92747 370 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 NEURL3Q96EH8 262 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 SEC22AQ96IW7 307 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 LINC01587Q99440 93 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 KIR2DL4Q99706 377 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 HSD17B10Q99714 261 aaKnown RBP4.51□□□□□ -1.69
CD44-231ENST00000531110 SRSF8Q9BRL6 282 aaKnown RBP4.51□□□□□ -1.69
CD44-231ENST00000531110 C19orf24Q9BVV8 132 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 PLEKHF2Q9H8W4 249 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 SCRT2Q9NQ03 307 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 HIGD1BQ9P298 99 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 LAMTOR3Q9UHA4 124 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 TP53TG3Q9ULZ0 132 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 LY96Q9Y6Y9 160 aa4.51□□□□□ -1.69
CD44-231ENST00000531110 TICRRQ7Z2Z1 1910 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 COL2A1P02458 1487 aaPredicted RBP4.5□□□□□ -1.69
CD44-231ENST00000531110 PLXNA3P51805 1871 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 PLXNA4Q9HCM2 1894 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 ZNF850A8MQ14 1090 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 SHISA9B4DS77 424 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 FCGR3BO75015 233 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 KRTDAPP60985 99 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 TMEM258P61165 79 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 RPS14P62263 151 aaKnown RBP4.5□□□□□ -1.69
CD44-231ENST00000531110 RPL23P62829 140 aaKnown RBP4.5□□□□□ -1.69
CD44-231ENST00000531110 RRN3P1Q2M238 152 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 RPEL1Q2QD12 228 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 CEACAM16Q2WEN9 425 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 Q499Y3 187 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 LRRC37A5PQ49AS3 106 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 CD164L2Q6UWJ8 174 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 Q6ZT83 130 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 Q6ZTC4 211 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 OOSP2Q86WS3 158 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 HOGA1Q86XE5 327 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 BAGE3Q86Y29 109 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 BAGE2Q86Y30 109 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 BPIFA4PQ86YQ2 179 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 TMEM123Q8N131 208 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 SLC22A18ASQ8N1D0 253 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 TMEM86AQ8N2M4 240 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 TMEM86BQ8N661 226 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 LRTM2Q8N967 370 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 OR4C13Q8NGP0 309 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 ZNF563Q8TA94 476 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 BAALCQ8WXS3 180 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 TMEM190Q8WZ59 177 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 LINC00526Q96FQ7 95 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 GFI1Q99684 422 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 SFXN3Q9BWM7 321 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 ULBP3Q9BZM4 244 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 PBOV1Q9GZY1 135 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 NAA60Q9H7X0 242 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 TAAR3PQ9P1P4 343 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 ANAPC10Q9UM13 185 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 LOC285556D6RIA3 1793 aa4.5□□□□□ -1.69
CD44-231ENST00000531110 TMEM89A2RUT3 159 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 EEF1E1-BLOC1S5C9J1V9 151 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 E9PLD3 99 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 C11orf98E9PRG8 122 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 FAM72CH0Y354 149 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 CCDC179H3BU77 68 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 DUSP14O95147 198 aaKnown RBP4.49□□□□□ -1.69
CD44-231ENST00000531110 IGKV3-20P01619 116 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 CD3DP04234 171 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 SLC25A5P05141 298 aaKnown RBP4.49□□□□□ -1.69
CD44-231ENST00000531110 ZNF708P17019 499 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 KLK2P20151 261 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 NTF3P20783 257 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 PPP1CCP36873 323 aaKnown RBP4.49□□□□□ -1.69
CD44-231ENST00000531110 OPRK1P41145 380 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 VDAC2P45880 294 aaPredicted RBP4.49□□□□□ -1.69
CD44-231ENST00000531110 PFN3P60673 137 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 UBE2G1P62253 170 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 SERF2P84101 59 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 MEF2CQ06413 473 aaPredicted RBP4.49□□□□□ -1.69
CD44-231ENST00000531110 KLF5Q13887 457 aaPredicted RBP4.49□□□□□ -1.69
CD44-231ENST00000531110 TAL2Q16559 108 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 VWC2Q2TAL6 325 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 SPRNQ5BIV9 151 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 ZNF684Q5T5D7 378 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 FAM72AQ5TYM5 149 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 LYRM7Q5U5X0 104 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 SLC35E4Q6ICL7 350 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 FAM72DQ6L9T8 149 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 Q6P435 159 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 DUX4L9Q6RFH8 374 aaPredicted RBP4.49□□□□□ -1.69
CD44-231ENST00000531110 GOLT1AQ6ZVE7 132 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 TMEM150AQ86TG1 271 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms