RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 C17orf112F2Z3M2 114 aa16.82■□□□□ 0.28
VPS28-212ENST00000530836 CORTO00230 105 aa16.82■□□□□ 0.28
VPS28-212ENST00000530836 HLA-DRB1P01911 266 aa16.82■□□□□ 0.28
VPS28-212ENST00000530836 GPX4P36969 197 aaPredicted RBP16.82■□□□□ 0.28
VPS28-212ENST00000530836 SSBP2P81877 361 aaPredicted RBP16.82■□□□□ 0.28
VPS28-212ENST00000530836 P2RX4Q99571 388 aa16.82■□□□□ 0.28
VPS28-212ENST00000530836 WDR83OSQ9Y284 106 aa16.82■□□□□ 0.28
VPS28-212ENST00000530836 FGF7P21781 194 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 FBLN7Q53RD9 439 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 PVRIGQ6DKI7 326 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 DPPA3Q6W0C5 159 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 C9orf139Q6ZV77 190 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 ZNF709Q8N972 641 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 OR1L6Q8NGR2 347 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 OR1P1Q8NH06 330 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 RBM14Q96PK6 669 aaKnown RBP16.81■□□□□ 0.28
VPS28-212ENST00000530836 SSX3Q99909 188 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 PFDN2Q9UHV9 154 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 PITPNC1Q9UKF7 332 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 CX3CL1P78423 397 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 RUNX1Q01196 453 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 ETFRF1Q6IPR1 90 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 SLC7A5P1Q8MH63 180 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 PCNPQ8WW12 178 aaKnown RBP16.81■□□□□ 0.28
VPS28-212ENST00000530836 SSMEM1Q8WWF3 244 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 ARPC1AQ92747 370 aa16.81■□□□□ 0.28
VPS28-212ENST00000530836 SMCO3A2RU48 225 aa16.8■□□□□ 0.28
VPS28-212ENST00000530836 CD69Q07108 199 aa16.8■□□□□ 0.28
VPS28-212ENST00000530836 RAB31Q13636 194 aa16.8■□□□□ 0.28
VPS28-212ENST00000530836 AKR1C8PQ5T2L2 129 aa16.8■□□□□ 0.28
VPS28-212ENST00000530836 BTNL8Q6UX41 500 aa16.8■□□□□ 0.28
VPS28-212ENST00000530836 TMEM182Q6ZP80 229 aaPredicted RBP16.8■□□□□ 0.28
VPS28-212ENST00000530836 PIFOQ8TCI5 191 aa16.8■□□□□ 0.28
VPS28-212ENST00000530836 C22orf15Q8WYQ4 148 aa16.8■□□□□ 0.28
VPS28-212ENST00000530836 PARP11Q9NR21 331 aa16.8■□□□□ 0.28
VPS28-212ENST00000530836 MOB4Q9Y3A3 225 aa16.8■□□□□ 0.28
VPS28-212ENST00000530836 FBXO7Q9Y3I1 522 aa16.8■□□□□ 0.28
VPS28-212ENST00000530836 ATP6V1G1O75348 118 aa16.79■□□□□ 0.28
VPS28-212ENST00000530836 PRH1P02810 166 aa16.79■□□□□ 0.28
VPS28-212ENST00000530836 TREML4Q6UXN2 200 aa16.79■□□□□ 0.28
VPS28-212ENST00000530836 BCL6BQ8N143 479 aaPredicted RBP16.79■□□□□ 0.28
VPS28-212ENST00000530836 ABHD5Q8WTS1 349 aa16.79■□□□□ 0.28
VPS28-212ENST00000530836 SLC25A33Q9BSK2 321 aa16.79■□□□□ 0.28
VPS28-212ENST00000530836 RSG1Q9BU20 258 aa16.79■□□□□ 0.28
VPS28-212ENST00000530836 NPCDR1Q9BY65 106 aa16.79■□□□□ 0.28
VPS28-212ENST00000530836 KCNIP2Q9NS61 270 aa16.79■□□□□ 0.28
VPS28-212ENST00000530836 F11RQ9Y624 299 aaKnown RBP16.79■□□□□ 0.28
VPS28-212ENST00000530836 AREGP15514 252 aa16.78■□□□□ 0.28
VPS28-212ENST00000530836 ARSJQ5FYB0 599 aaPredicted RBP16.78■□□□□ 0.28
VPS28-212ENST00000530836 TEPPQ6URK8 271 aa16.78■□□□□ 0.28
VPS28-212ENST00000530836 C16orf82Q7Z2V1 217 aa16.78■□□□□ 0.28
VPS28-212ENST00000530836 PLA2G2EQ9NZK7 142 aa16.78■□□□□ 0.28
VPS28-212ENST00000530836 SOX21Q9Y651 276 aaPredicted RBP16.78■□□□□ 0.28
VPS28-212ENST00000530836 JMJD1CQ15652 2540 aa16.78■□□□□ 0.28
VPS28-212ENST00000530836 NUDT19A8MXV4 375 aa16.78■□□□□ 0.28
VPS28-212ENST00000530836 M0QZK8 103 aa16.78■□□□□ 0.28
VPS28-212ENST00000530836 CYB5BO43169 146 aa16.78■□□□□ 0.28
VPS28-212ENST00000530836 MBP02144 154 aa16.78■□□□□ 0.28
VPS28-212ENST00000530836 CAMLGP49069 296 aa16.78■□□□□ 0.28
VPS28-212ENST00000530836 TMEM144Q7Z5S9 345 aa16.78■□□□□ 0.28
VPS28-212ENST00000530836 LSM4Q9Y4Z0 139 aaKnown RBP16.78■□□□□ 0.28
VPS28-212ENST00000530836 REG1AP05451 166 aa16.77■□□□□ 0.27
VPS28-212ENST00000530836 AKR1C1Q04828 323 aa16.77■□□□□ 0.27
VPS28-212ENST00000530836 C5orf56Q8N8D9 126 aa16.77■□□□□ 0.27
VPS28-212ENST00000530836 SLC35E1Q96K37 410 aa16.77■□□□□ 0.27
VPS28-212ENST00000530836 CXorf58Q96LI9 332 aa16.77■□□□□ 0.27
VPS28-212ENST00000530836 IGHV7-81A0A0B4J1V7 117 aa16.76■□□□□ 0.27
VPS28-212ENST00000530836 NPIPB5A8MRT5 1133 aa16.76■□□□□ 0.27
VPS28-212ENST00000530836 CRYGCP07315 174 aa16.76■□□□□ 0.27
VPS28-212ENST00000530836 CTRB1P17538 263 aa16.76■□□□□ 0.27
VPS28-212ENST00000530836 OPRK1P41145 380 aa16.76■□□□□ 0.27
VPS28-212ENST00000530836 CTRB2Q6GPI1 263 aa16.76■□□□□ 0.27
VPS28-212ENST00000530836 SLC16A13Q7RTY0 426 aa16.76■□□□□ 0.27
VPS28-212ENST00000530836 TMEM68Q96MH6 324 aa16.76■□□□□ 0.27
VPS28-212ENST00000530836 A6NDX4 124 aa16.75■□□□□ 0.27
VPS28-212ENST00000530836 H3BUX3 64 aa16.75■□□□□ 0.27
VPS28-212ENST00000530836 PXDC1Q5TGL8 231 aa16.75■□□□□ 0.27
VPS28-212ENST00000530836 Q6ZRG5 221 aa16.75■□□□□ 0.27
VPS28-212ENST00000530836 COMMD7Q86VX2 200 aa16.75■□□□□ 0.27
VPS28-212ENST00000530836 DEFA4P12838 97 aa16.74■□□□□ 0.27
VPS28-212ENST00000530836 GAMTQ14353 236 aa16.74■□□□□ 0.27
VPS28-212ENST00000530836 TTC9CQ8N5M4 171 aa16.74■□□□□ 0.27
VPS28-212ENST00000530836 LYPD6BQ8NI32 183 aa16.74■□□□□ 0.27
VPS28-212ENST00000530836 CUBNO60494 3623 aa16.74■□□□□ 0.27
VPS28-212ENST00000530836 DEFB112Q30KQ8 113 aa16.74■□□□□ 0.27
VPS28-212ENST00000530836 TMEM41BQ5BJD5 291 aa16.74■□□□□ 0.27
VPS28-212ENST00000530836 OR5R1Q8NH85 324 aa16.74■□□□□ 0.27
VPS28-212ENST00000530836 SGMS2Q8NHU3 365 aa16.74■□□□□ 0.27
VPS28-212ENST00000530836 FAM213BQ8TBF2 198 aa16.74■□□□□ 0.27
VPS28-212ENST00000530836 ZNF418Q8TF45 676 aaPredicted RBP16.74■□□□□ 0.27
VPS28-212ENST00000530836 ZNF48Q96MX3 618 aaPredicted RBP16.74■□□□□ 0.27
VPS28-212ENST00000530836 WNT10AQ9GZT5 417 aa16.74■□□□□ 0.27
VPS28-212ENST00000530836 PRDM13Q9H4Q3 707 aa16.74■□□□□ 0.27
VPS28-212ENST00000530836 PLXNB1O43157 2135 aa16.73■□□□□ 0.27
VPS28-212ENST00000530836 RIPPLY3P57055 190 aa16.73■□□□□ 0.27
VPS28-212ENST00000530836 ZNF616Q08AN1 781 aa16.73■□□□□ 0.27
VPS28-212ENST00000530836 IL34Q6ZMJ4 242 aa16.73■□□□□ 0.27
VPS28-212ENST00000530836 PRIMA1Q86XR5 153 aa16.73■□□□□ 0.27
VPS28-212ENST00000530836 MISP3Q96FF7 219 aa16.73■□□□□ 0.27
VPS28-212ENST00000530836 MGST2Q99735 147 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms