RNA–Protein interactions for RNA: ENST00000528563.5

HIF3A-211, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2

Gene HIF3A, Length 1,486 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-211ENST00000528563 INPP1P49441 399 aa12.76□□□□□ -0.37
HIF3A-211ENST00000528563 CCR6P51684 374 aa12.76□□□□□ -0.37
HIF3A-211ENST00000528563 SRPXP78539 464 aa12.76□□□□□ -0.37
HIF3A-211ENST00000528563 NMSQ5H8A3 153 aa12.76□□□□□ -0.37
HIF3A-211ENST00000528563 SPSB3Q6PJ21 355 aa12.76□□□□□ -0.37
HIF3A-211ENST00000528563 LYZL2Q7Z4W2 148 aa12.76□□□□□ -0.37
HIF3A-211ENST00000528563 LGI3Q8N145 548 aa12.76□□□□□ -0.37
HIF3A-211ENST00000528563 MISP3Q96FF7 219 aa12.76□□□□□ -0.37
HIF3A-211ENST00000528563 CHRDL1Q9BU40 450 aa12.76□□□□□ -0.37
HIF3A-211ENST00000528563 ZNF436Q9C0F3 470 aaPredicted RBP12.76□□□□□ -0.37
HIF3A-211ENST00000528563 A8MWP6 167 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 MT-CO2P00403 227 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 CTSGP08311 255 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 RNASE2P10153 161 aaKnown RBP12.75□□□□□ -0.37
HIF3A-211ENST00000528563 IL7P13232 177 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 EDN2P20800 178 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 CBLN1P23435 193 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 FCGR2BP31994 310 aaPredicted RBP12.75□□□□□ -0.37
HIF3A-211ENST00000528563 RBMS2Q15434 407 aaKnown RBP12.75□□□□□ -0.37
HIF3A-211ENST00000528563 DEFB114Q30KQ6 69 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 BSXQ3C1V8 233 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 UNQ9165/PRO28630Q6UXU0 137 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 LINC00299Q6ZSB3 139 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 Q8N1Y9 231 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 TXN2Q99757 166 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 B9D2Q9BPU9 175 aa12.75□□□□□ -0.37
HIF3A-211ENST00000528563 IGHV3-35A0A0C4DH35 117 aa12.74□□□□□ -0.37
HIF3A-211ENST00000528563 TMEM213A2RRL7 107 aa12.74□□□□□ -0.37
HIF3A-211ENST00000528563 IZUMO1RA6ND01 250 aa12.74□□□□□ -0.37
HIF3A-211ENST00000528563 NDUFB6O95139 128 aa12.74□□□□□ -0.37
HIF3A-211ENST00000528563 SULT1A3P0DMM9 295 aa12.74□□□□□ -0.37
HIF3A-211ENST00000528563 SULT1A4P0DMN0 295 aa12.74□□□□□ -0.37
HIF3A-211ENST00000528563 SUB1P53999 127 aaKnown RBP eCLIP12.74□□□□□ -0.37
HIF3A-211ENST00000528563 MFAP4P55083 255 aa12.74□□□□□ -0.37
HIF3A-211ENST00000528563 LRTM2Q8N967 370 aa12.74□□□□□ -0.37
HIF3A-211ENST00000528563 OR2K2Q8NGT1 345 aa12.74□□□□□ -0.37
HIF3A-211ENST00000528563 ENY2Q9NPA8 101 aa12.74□□□□□ -0.37
HIF3A-211ENST00000528563 GAR1Q9NY12 217 aaKnown RBP12.74□□□□□ -0.37
HIF3A-211ENST00000528563 CACFD1Q9UGQ2 172 aa12.74□□□□□ -0.37
HIF3A-211ENST00000528563 SMAD5-AS1Q9Y6J3 95 aa12.74□□□□□ -0.37
HIF3A-211ENST00000528563 LINC00854A0A1B0GVQ3 168 aa12.73□□□□□ -0.37
HIF3A-211ENST00000528563 HOXA1P49639 335 aaPredicted RBP12.73□□□□□ -0.37
HIF3A-211ENST00000528563 ANKRD55Q3KP44 614 aa12.73□□□□□ -0.37
HIF3A-211ENST00000528563 CD300EQ496F6 205 aaPredicted RBP12.73□□□□□ -0.37
HIF3A-211ENST00000528563 TM4SF20Q53R12 229 aa12.73□□□□□ -0.37
HIF3A-211ENST00000528563 LCN12Q6JVE5 192 aa12.73□□□□□ -0.37
HIF3A-211ENST00000528563 CENPSQ8N2Z9 138 aa12.73□□□□□ -0.37
HIF3A-211ENST00000528563 ZNF414Q96IQ9 312 aa12.73□□□□□ -0.37
HIF3A-211ENST00000528563 C7orf50Q9BRJ6 194 aaKnown RBP12.73□□□□□ -0.37
HIF3A-211ENST00000528563 TECRQ9NZ01 308 aaKnown RBP12.73□□□□□ -0.37
HIF3A-211ENST00000528563 PIGBOS1A0A0B4J2F0 54 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 ZNF785A8K8V0 405 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 PLA2G10O15496 165 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 SFT2D2O95562 160 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 IGHV3-48P01763 117 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 C8orf88P0DMB2 117 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 VAMP1P23763 118 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 BTCP35070 178 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 ELLP55199 621 aaPredicted RBP12.72□□□□□ -0.37
HIF3A-211ENST00000528563 PPP1R1AQ13522 171 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 CNPY1Q3B7I2 92 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 Q56UQ5 140 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 UBAC2Q8NBM4 344 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 PINX1Q96BK5 328 aaKnown RBP12.72□□□□□ -0.37
HIF3A-211ENST00000528563 PALMDQ9NP74 551 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 A0A1B0GU03 582 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 DUXBA0A1W2PPF3 345 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 CENPXA8MT69 81 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 NDUFA4O00483 81 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 HTR2BP41595 481 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 UBE2MP61081 183 aaKnown RBP12.72□□□□□ -0.37
HIF3A-211ENST00000528563 CD69Q07108 199 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 SMCO1Q147U7 214 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 UXS1Q8NBZ7 420 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 CACNG8Q8WXS5 425 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 TMEM190Q8WZ59 177 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 HEYLQ9NQ87 328 aaPredicted RBP12.72□□□□□ -0.37
HIF3A-211ENST00000528563 UFC1Q9Y3C8 167 aa12.72□□□□□ -0.37
HIF3A-211ENST00000528563 CORTO00230 105 aa12.71□□□□□ -0.38
HIF3A-211ENST00000528563 TNFRSF9Q07011 255 aa12.71□□□□□ -0.38
HIF3A-211ENST00000528563 MARC2Q969Z3 335 aa12.71□□□□□ -0.38
HIF3A-211ENST00000528563 FNDC4Q9H6D8 234 aaPredicted RBP12.71□□□□□ -0.38
HIF3A-211ENST00000528563 MRPL27Q9P0M9 148 aaKnown RBP12.71□□□□□ -0.38
HIF3A-211ENST00000528563 HSPB7Q9UBY9 170 aa12.71□□□□□ -0.38
HIF3A-211ENST00000528563 FLVCR2Q9UPI3 526 aa12.71□□□□□ -0.38
HIF3A-211ENST00000528563 CEBPZOSA8MTT3 80 aa12.7□□□□□ -0.38
HIF3A-211ENST00000528563 NUPL2O15504 423 aaKnown RBP12.7□□□□□ -0.38
HIF3A-211ENST00000528563 PITX3O75364 302 aa12.7□□□□□ -0.38
HIF3A-211ENST00000528563 MLANAQ16655 118 aa12.7□□□□□ -0.38
HIF3A-211ENST00000528563 C2orf83Q53S99 150 aa12.7□□□□□ -0.38
HIF3A-211ENST00000528563 DUSP18Q8NEJ0 188 aa12.7□□□□□ -0.38
HIF3A-211ENST00000528563 DYNLRB2Q8TF09 96 aa12.7□□□□□ -0.38
HIF3A-211ENST00000528563 MLXQ9UH92 298 aa12.7□□□□□ -0.38
HIF3A-211ENST00000528563 C9orf170A2RU37 121 aa12.69□□□□□ -0.38
HIF3A-211ENST00000528563 K7EMT4 169 aa12.69□□□□□ -0.38
HIF3A-211ENST00000528563 NXPH3O95157 252 aa12.69□□□□□ -0.38
HIF3A-211ENST00000528563 SLC25A6P12236 298 aa12.69□□□□□ -0.38
HIF3A-211ENST00000528563 NPBWR1P48145 328 aa12.69□□□□□ -0.38
HIF3A-211ENST00000528563 TMEM170AQ8WVE7 144 aa12.69□□□□□ -0.38
HIF3A-211ENST00000528563 HIPK2Q9H2X6 1198 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms