RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 OR2T35Q8NGX2 323 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 SRSF12Q8WXF0 261 aaKnown RBP5.82□□□□□ -1.48
CD44-228ENST00000528455 GON7Q9BXV9 100 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 RBKSQ9H477 322 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 C11orf1Q9H5F2 150 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 PLEKHA3Q9HB20 300 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 ENY2Q9NPA8 101 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 ESM1Q9NQ30 184 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 HEYLQ9NQ87 328 aaPredicted RBP5.82□□□□□ -1.48
CD44-228ENST00000528455 KLK9Q9UKQ9 250 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 LINC01548A6NM66 108 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 NPIPB5A8MRT5 1133 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 TEX22C9J3V5 150 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 H0YIZ8 118 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 L7N2F9 121 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 AP4M1O00189 453 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 TSC22D2O75157 780 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 SCAF4O95104 1147 aaKnown RBP5.81□□□□□ -1.48
CD44-228ENST00000528455 C1QBP02746 253 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 OPN1MWP04001 364 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 OPN1MW2P0DN77 364 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 OPN1MW3P0DN78 364 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 OR13C7P0DN81 318 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 GYPEP15421 78 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 SNCAP37840 140 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 HTR2BP41595 481 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 P2RY1P47900 373 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 GNB1P62873 340 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 UBA52P62987 128 aaKnown RBP5.81□□□□□ -1.48
CD44-228ENST00000528455 VAMP2P63027 116 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 BSXQ3C1V8 233 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 Q5BKY6 102 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 PVRIGQ6DKI7 326 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 C12orf54Q6X4T0 127 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 Q6ZSN1 163 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 SLC35E3Q7Z769 313 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 ZNF546Q86UE3 836 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 OR2C3Q8N628 320 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.81□□□□□ -1.48
CD44-228ENST00000528455 OR10W1Q8NGF6 305 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 DTD1Q8TEA8 209 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 ARPC1AQ92747 370 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 HYLS1Q96M11 299 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 HSPB9Q9BQS6 159 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 MAGT1Q9H0U3 335 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 C16orf95Q9H693 158 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 TNFRSF19Q9NS68 423 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 PSENENQ9NZ42 101 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 LSM5Q9Y4Y9 91 aaKnown RBP5.81□□□□□ -1.48
CD44-228ENST00000528455 TENM1Q9UKZ4 2725 aa5.81□□□□□ -1.48
CD44-228ENST00000528455 TRAV14DV4A0A0A6YYC5 116 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 A0A1B0GW64 132 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 IGLC7A0M8Q6 106 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 TMEM89A2RUT3 159 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 KRTAP9-7A8MTY7 169 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 CYB5BO43169 146 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 TMEM50AO95807 157 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 SCGB1D2O95969 90 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 MYOD1P15172 320 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 CTRB1P17538 263 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 PPIFP30405 207 aaKnown RBP5.8□□□□□ -1.48
CD44-228ENST00000528455 NUP62P37198 522 aaPredicted RBP5.8□□□□□ -1.48
CD44-228ENST00000528455 RAB11AP62491 216 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 WT1-ASQ06250 92 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 LRRC37A5PQ49AS3 106 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 C2orf83Q53S99 150 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 CTRB2Q6GPI1 263 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 ZNF114Q8NC26 417 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 LFNGQ8NES3 379 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 OR1P1Q8NH06 330 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 HINT2Q9BX68 163 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 SLC25A31Q9H0C2 315 aa5.8□□□□□ -1.48
CD44-228ENST00000528455 LYRM2Q9NU23 88 aaPredicted RBP5.8□□□□□ -1.48
CD44-228ENST00000528455 RCL1Q9Y2P8 373 aaKnown RBP5.8□□□□□ -1.48
CD44-228ENST00000528455 STRAPQ9Y3F4 350 aaKnown RBP5.8□□□□□ -1.48
CD44-228ENST00000528455 NBEAL1Q6ZS30 2694 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 TRAV41A0A0B4J266 112 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 G3V3Q6 166 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 H3BUA1 57 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 CORTO00230 105 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 ATP6V0E1O15342 81 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 SSSCA1O60232 199 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 NXPH3O95157 252 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 NDUFA7O95182 113 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 IFNA10P01566 189 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 DEFA4P12838 97 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 HIST1H1BP16401 226 aaKnown RBP5.79□□□□□ -1.48
CD44-228ENST00000528455 RPL12P30050 165 aaKnown RBP5.79□□□□□ -1.48
CD44-228ENST00000528455 GPX4P36969 197 aaPredicted RBP5.79□□□□□ -1.48
CD44-228ENST00000528455 HOXA1P49639 335 aaPredicted RBP5.79□□□□□ -1.48
CD44-228ENST00000528455 S100A10P60903 97 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 ATP6V1FQ16864 119 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 C9orf152Q5JTZ5 239 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 SPANXN5Q5MJ07 72 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 C10orf55Q5SWW7 151 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 ASPHD1Q5U4P2 390 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 UNQ5815/PRO19632Q6UWF5 114 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 TMEM14EPQ6UXP3 125 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 ACOT7LQ6ZUV0 252 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 TMEM252Q8N6L7 170 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms