RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 OR2T35Q8NGX2 323 aa12.66□□□□□ -0.38
LSM1-204ENST00000522515 NDUFB8O95169 186 aa12.65□□□□□ -0.38
LSM1-204ENST00000522515 HIST1H1BP16401 226 aaKnown RBP12.65□□□□□ -0.38
LSM1-204ENST00000522515 RPL23AP62750 156 aaKnown RBP12.65□□□□□ -0.38
LSM1-204ENST00000522515 KIAA0141Q14154 515 aaPredicted RBP12.65□□□□□ -0.38
LSM1-204ENST00000522515 PRSS54Q6PEW0 395 aa12.65□□□□□ -0.38
LSM1-204ENST00000522515 MISP3Q96FF7 219 aa12.65□□□□□ -0.38
LSM1-204ENST00000522515 ST6GAL2Q96JF0 529 aa12.65□□□□□ -0.38
LSM1-204ENST00000522515 MBD2Q9UBB5 411 aa12.65□□□□□ -0.38
LSM1-204ENST00000522515 FBXL7Q9UJT9 491 aa12.65□□□□□ -0.38
LSM1-204ENST00000522515 PAIP2BQ9ULR5 123 aaKnown RBP12.65□□□□□ -0.38
LSM1-204ENST00000522515 STRAPQ9Y3F4 350 aaKnown RBP12.65□□□□□ -0.38
LSM1-204ENST00000522515 E5RGE8 158 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 G3V3Q6 166 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 CYB5BO43169 146 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 TSC22D2O75157 780 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 PET100P0DJ07 73 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 CAV2P51636 162 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 RPP30P78346 268 aaKnown RBP12.64□□□□□ -0.39
LSM1-204ENST00000522515 NECAP1Q8NC96 275 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 MYOZ3Q8TDC0 251 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 PINX1Q96BK5 328 aaKnown RBP12.64□□□□□ -0.39
LSM1-204ENST00000522515 IGHV3-21A0A0B4J1V1 117 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 FAM24AA6NFZ4 105 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 SMLR1H3BR10 107 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 CCNKO75909 580 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 ATP5IP56385 69 aaPredicted RBP12.64□□□□□ -0.39
LSM1-204ENST00000522515 C15orf32Q32M92 178 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 TMEM14EPQ6UXP3 125 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 NOXA1Q86UR1 476 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 ZNF491Q8N8L2 437 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 THAP6Q8TBB0 222 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 CITED2Q99967 270 aaPredicted RBP12.64□□□□□ -0.39
LSM1-204ENST00000522515 LYRM2Q9NU23 88 aaPredicted RBP12.64□□□□□ -0.39
LSM1-204ENST00000522515 THYN1Q9P016 225 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 S4R3C0 116 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 TENM1Q9UKZ4 2725 aa12.64□□□□□ -0.39
LSM1-204ENST00000522515 FAM223BA6NKX1 122 aa12.63□□□□□ -0.39
LSM1-204ENST00000522515 K7EIM0 57 aa12.63□□□□□ -0.39
LSM1-204ENST00000522515 IFNA4P05014 189 aa12.63□□□□□ -0.39
LSM1-204ENST00000522515 OR8U8P0C7N1 319 aa12.63□□□□□ -0.39
LSM1-204ENST00000522515 METTL15P1P0C7V9 234 aa12.63□□□□□ -0.39
LSM1-204ENST00000522515 LYL1P12980 280 aa12.63□□□□□ -0.39
LSM1-204ENST00000522515 RAB11AP62491 216 aa12.63□□□□□ -0.39
LSM1-204ENST00000522515 FGL1Q08830 312 aa12.63□□□□□ -0.39
LSM1-204ENST00000522515 MLANAQ16655 118 aa12.63□□□□□ -0.39
LSM1-204ENST00000522515 FAM223AQ8IWN6 122 aa12.63□□□□□ -0.39
LSM1-204ENST00000522515 MDFIQ99750 246 aa12.63□□□□□ -0.39
LSM1-204ENST00000522515 FNDC4Q9H6D8 234 aaPredicted RBP12.63□□□□□ -0.39
LSM1-204ENST00000522515 TCRBV4S1A1TA0A5B7 111 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 MFSD2BA6NFX1 497 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 PMS2P5A8MQ11 134 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 I3L2K1 104 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 CORTO00230 105 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 MT-CO2P00403 227 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 IGHV3-11P01762 117 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 IGHV3-48P01763 117 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 P2RY1P47900 373 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 ATP5G2Q06055 141 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 KHDC1LQ5JSQ8 128 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 ETV3LQ6ZN32 361 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 AKAP14Q86UN6 197 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 RNASEH2CQ8TDP1 164 aaKnown RBP12.62□□□□□ -0.39
LSM1-204ENST00000522515 SCARB1Q8WTV0 552 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 USMG5Q96IX5 58 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 GNB4Q9HAV0 340 aa12.62□□□□□ -0.39
LSM1-204ENST00000522515 IGSF23A1L1A6 192 aa12.61□□□□□ -0.39
LSM1-204ENST00000522515 PRSS46E5RG02 174 aa12.61□□□□□ -0.39
LSM1-204ENST00000522515 OPRK1P41145 380 aa12.61□□□□□ -0.39
LSM1-204ENST00000522515 C18orf65Q6ZTR6 163 aa12.61□□□□□ -0.39
LSM1-204ENST00000522515 HAPLN4Q86UW8 402 aa12.61□□□□□ -0.39
LSM1-204ENST00000522515 TMEM252Q8N6L7 170 aa12.61□□□□□ -0.39
LSM1-204ENST00000522515 DCUN1D4Q92564 292 aa12.61□□□□□ -0.39
LSM1-204ENST00000522515 UBE2E2Q96LR5 201 aa12.61□□□□□ -0.39
LSM1-204ENST00000522515 OR5B12Q96R08 314 aa12.61□□□□□ -0.39
LSM1-204ENST00000522515 A0A0G2JLM5 398 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 CST7O76096 145 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 IGHV3-23P01764 117 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 CDX1P47902 265 aaPredicted RBP12.6□□□□□ -0.39
LSM1-204ENST00000522515 CD300CQ08708 224 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 ARL16Q0P5N6 197 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 EXOSC2Q13868 293 aaKnown RBP12.6□□□□□ -0.39
LSM1-204ENST00000522515 OR8G2PQ6IF36 304 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 C12orf54Q6X4T0 127 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 CITED1Q99966 193 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 TSSC4Q9Y5U2 329 aaPredicted RBP12.6□□□□□ -0.39
LSM1-204ENST00000522515 COL6A5A8TX70 2615 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 SLC25A4P12235 298 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 CD69Q07108 199 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 TCTE3Q8IZS6 198 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 VN1R17PQ8TDU5 208 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 CXorf58Q96LI9 332 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 NEURL2Q9BR09 285 aa12.6□□□□□ -0.39
LSM1-204ENST00000522515 MRPL36Q9P0J6 103 aaKnown RBP12.6□□□□□ -0.39
LSM1-204ENST00000522515 FXYD6-FXYD2A0A087WZ82 144 aa12.59□□□□□ -0.39
LSM1-204ENST00000522515 A0A1W2PRX2 142 aa12.59□□□□□ -0.39
LSM1-204ENST00000522515 ADARB2-AS1A8MUL3 147 aa12.59□□□□□ -0.39
LSM1-204ENST00000522515 EWSR1Q01844 656 aaKnown RBP eCLIP12.59□□□□□ -0.39
LSM1-204ENST00000522515 NHLH2Q02577 135 aa12.59□□□□□ -0.39
LSM1-204ENST00000522515 C3orf56Q8N813 242 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms