RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NMSQ5H8A3 153 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 ZNF502Q8TBZ5 544 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 ATG101Q9BSB4 218 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 TBL2Q9Y4P3 447 aaKnown RBP10.58□□□□□ -0.72
USP53-209ENST00000514665 YLPM1P49750 1951 aaKnown RBP10.57□□□□□ -0.72
USP53-209ENST00000514665 IL18BPO95998 194 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 IGHV3-23P01764 117 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 ATP5IP56385 69 aaPredicted RBP10.57□□□□□ -0.72
USP53-209ENST00000514665 LINC00205P59089 165 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 CSRP2Q16527 193 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 TMEM30BQ3MIR4 351 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 HEPN1Q6WQI6 88 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 RBPMS2Q6ZRY4 209 aaKnown RBP10.57□□□□□ -0.72
USP53-209ENST00000514665 TMEM144Q7Z5S9 345 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 WDR83OSQ9Y284 106 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 CUL9Q8IWT3 2517 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 LOC105371242A0A075B767 164 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 YPEL1O60688 119 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 YPEL2Q96QA6 119 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 SEMA5BQ9P283 1151 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 CDC42EP3Q9UKI2 254 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 SH2D7A6NKC9 451 aaPredicted RBP10.57□□□□□ -0.72
USP53-209ENST00000514665 C17orf100A8MU93 164 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 PEX7O00628 323 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 HS3ST6Q96QI5 342 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 KLK15Q9H2R5 256 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 B9A039 149 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 OR52E5Q8NH55 327 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 RAB37Q96AX2 223 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 DCAF16Q9NXF7 216 aa10.57□□□□□ -0.72
USP53-209ENST00000514665 NPIPB11E5RHQ5 1161 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 LYNX1G3V0Z9 82 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 LYNX1P0DP58 116 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 PRB4P10163 310 aaPredicted RBP10.56□□□□□ -0.72
USP53-209ENST00000514665 UCNP55089 124 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 HERPUD1Q15011 391 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 SLC25A34Q6PIV7 304 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 OCC1Q8TAD7 63 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 METTL26Q96S19 204 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 SS18L1O75177 396 aaPredicted RBP10.56□□□□□ -0.72
USP53-209ENST00000514665 SERF1AO75920 110 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 CD24P25063 80 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 APOBEC3AP31941 199 aaPredicted RBP10.56□□□□□ -0.72
USP53-209ENST00000514665 HBBP68871 147 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 RELQ04864 619 aaPredicted RBP10.56□□□□□ -0.72
USP53-209ENST00000514665 LY6EQ16553 131 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 LINC00469Q8N7U9 141 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 METRNQ9UJH8 293 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 FOXA2Q9Y261 457 aaPredicted RBP10.56□□□□□ -0.72
USP53-209ENST00000514665 IGHV1-18A0A0C4DH31 117 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 TM4SF5O14894 197 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 ADCYAP1P18509 176 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 PSMB2P49721 201 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 LEMD1Q68G75 181 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 TMEM42Q69YG0 159 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.56□□□□□ -0.72
USP53-209ENST00000514665 MBD3L1Q8WWY6 194 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 AP5S1Q9NUS5 200 aa10.56□□□□□ -0.72
USP53-209ENST00000514665 TRBV9A0A0B4J1U6 114 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 A0A0G2JRQ6 117 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 PYYP10082 97 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 TBR1Q16650 682 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 CYB5R2Q6BCY4 276 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 FOXI3A8MTJ6 420 aaPredicted RBP10.55□□□□□ -0.72
USP53-209ENST00000514665 C9JQL5 133 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 UPK2O00526 184 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 ZNF207O43670 478 aaKnown RBP10.55□□□□□ -0.72
USP53-209ENST00000514665 HLA-DRB1P01911 266 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 CD59P13987 128 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 C10orf55Q5SWW7 151 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 ZNF600Q6ZNG1 722 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 ST6GALNAC6Q969X2 333 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 DPM3Q9P2X0 92 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 LINC00312Q9Y6C7 94 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 C5orf52A6NGY3 159 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 C15orf61A6NNL5 157 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 ANOS1P23352 680 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 TM4SF20Q53R12 229 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 Q6ZRM9 215 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 MED13Q9UHV7 2174 aa10.55□□□□□ -0.72
USP53-209ENST00000514665 IGHV3-66A0A0C4DH42 116 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 RPL13AP40429 203 aaKnown RBP10.54□□□□□ -0.72
USP53-209ENST00000514665 RNFT1Q5M7Z0 435 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 C1QL4Q86Z23 238 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 BMPERQ8N8U9 685 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 OR10AG1Q8NH19 301 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 GCSHP23434 173 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 B3GALT5-AS1P59052 145 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 GNG5P63218 68 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 CX3CL1P78423 397 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 EFNB3Q15768 340 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 CLEC2AQ6UVW9 174 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 OR10W1Q8NGF6 305 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 CACNG8Q8WXS5 425 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 TRAV30A0A087WSZ9 112 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 SNAI2O43623 268 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 IGKV3-15P01624 115 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 C12orf54Q6X4T0 127 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 C20orf204Q6ZNR8 217 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 OR10J6PQ8NGY7 276 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms