RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 OR1P1Q8NH06 330 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 IGKV1D-43A0A0B4J1Z2 117 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 ARL14EPLP0DKL9 152 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 MEF2BQ02080 365 aaPredicted RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 C2orf68Q2NKX9 166 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 CD200R1LQ6Q8B3 271 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 REC114Q7Z4M0 266 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 BEND2Q8NDZ0 799 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 VN1R17PQ8TDU5 208 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 ZNF837Q96EG3 531 aaPredicted RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 IFT22Q9H7X7 185 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 MED19A0JLT2 244 aaPredicted RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 LINC00587B1AMM8 73 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 H3BQ15 152 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 INSP01308 110 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 RPL36AP83881 106 aaKnown RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 PMS2P11Q13670 270 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 OR4C5Q8NGB2 326 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 OR10AG1Q8NH19 301 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 RPL36ALQ969Q0 106 aaKnown RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 AQP10Q96PS8 301 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 CHCHD5Q9BSY4 110 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 NIT2Q9NQR4 276 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 FBLN5Q9UBX5 448 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 S4R3C0 116 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 ADARB2-AS1A8MUL3 147 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 SPNP16150 400 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 COL8A2P25067 703 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 IL17DQ8TAD2 202 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 MBNL3Q9NUK0 354 aaKnown RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 V9GYH0 126 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 MYO5AQ9Y4I1 1855 aaKnown RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 A0A1B0GTI1 187 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 PIN1P1O15428 100 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 FAM3BP58499 235 aaPredicted RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 TMEM219Q86XT9 240 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 FAM24BQ8N5W8 94 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 ST20Q9HBF5 79 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 NXT2Q9NPJ8 142 aaKnown RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 NPDC1Q9NQX5 325 aaPredicted RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 DNAL4O96015 105 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 RPL35AP18077 110 aaKnown RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 SLC25A48Q6ZT89 311 aaKnown RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 DMRTC2Q8IXT2 367 aaPredicted RBP3.52□□□□□ -1.85
VCAN-209ENST00000513016 FER1L6-AS1Q8NA97 138 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 PLXNA1Q9UIW2 1896 aa3.52□□□□□ -1.85
VCAN-209ENST00000513016 COL11A1P12107 1806 aaPredicted RBP3.51□□□□□ -1.85
VCAN-209ENST00000513016 COL4A1P02462 1669 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 IGHV2-70DA0A0C4DH43 119 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 BUB1B-PAK6H3BSN5 160 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 PEX7O00628 323 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 KLRD1Q13241 179 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 SMIM12Q96EX1 92 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 MYO16Q9Y6X6 1858 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 IGHV3-48P01763 117 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 SNRPCP09234 159 aaKnown RBP3.51□□□□□ -1.85
VCAN-209ENST00000513016 NAT1P18440 290 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 RUNX1Q01196 453 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 PRR30Q53SZ7 412 aaPredicted RBP3.51□□□□□ -1.85
VCAN-209ENST00000513016 NHLRC3Q5JS37 347 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 TMEM183AQ8IXX5 376 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 RCHY1Q96PM5 261 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 AICDAQ9GZX7 198 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 PRDM13Q9H4Q3 707 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 ATG2BQ96BY7 2078 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 APOMO95445 188 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 IGFBP2P18065 325 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 SAA4P35542 130 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 LINC00477Q96M19 166 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 LTBP1Q14766 1721 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 LINC00862A6NCI5 91 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 TOMM7Q9P0U1 55 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 BRCA1P38398 1863 aaKnown RBP3.51□□□□□ -1.85
VCAN-209ENST00000513016 CD8AP01732 235 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 ELANEP08246 267 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 GAFA1Q96PS6 74 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 CXorf65A6NEN9 183 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 CD24P25063 80 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 IFI27P40305 119 aaPredicted RBP3.51□□□□□ -1.85
VCAN-209ENST00000513016 ZNF880Q6PDB4 577 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 TP53RKQ96S44 253 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 Q9H3A6 140 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 H3BTX0 84 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 B3GALT5-AS1P59052 145 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 HBBP68871 147 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 C15orf32Q32M92 178 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 AWAT1Q58HT5 328 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 OR10J3Q5JRS4 329 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 ST6GAL2Q96JF0 529 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 PPP1R3EQ9H7J1 279 aa3.51□□□□□ -1.85
VCAN-209ENST00000513016 KNL1Q8NG31 2342 aa3.5□□□□□ -1.85
VCAN-209ENST00000513016 C9orf66Q5T8R8 295 aa3.5□□□□□ -1.85
VCAN-209ENST00000513016 PMCHL2Q9BQD1 86 aa3.5□□□□□ -1.85
VCAN-209ENST00000513016 TRAF4Q9BUZ4 470 aaPredicted RBP3.5□□□□□ -1.85
VCAN-209ENST00000513016 OR5AC2Q9NZP5 309 aa3.5□□□□□ -1.85
VCAN-209ENST00000513016 LINC00527Q9UJ94 153 aa3.5□□□□□ -1.85
VCAN-209ENST00000513016 ARID1BQ8NFD5 2236 aaPredicted RBP3.5□□□□□ -1.85
VCAN-209ENST00000513016 MPTX1A8MV57 137 aa3.5□□□□□ -1.85
VCAN-209ENST00000513016 HOXA5P20719 270 aa3.5□□□□□ -1.85
VCAN-209ENST00000513016 DUTP33316 252 aaKnown RBP3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms