RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 GPR179Q6PRD1 2367 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 DKK1O94907 266 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 PRSS1P07477 247 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 NBEAP1P0C6P0 100 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 RNASEH2CQ8TDP1 164 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 TMEM70Q9BUB7 260 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 CDC42EP3Q9UKI2 254 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 A0A1W2PRE2 83 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 TM4SF5O14894 197 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 FTH1P19P0C7X4 201 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 Q8NFD4 153 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 OR9G1Q8NH87 305 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 SRSF12Q8WXF0 261 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 IGHV1-18A0A0C4DH31 117 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 GFRA3O60609 400 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 ZNF324O75467 553 aaPredicted RBP6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 ORM1P02763 201 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 TCTAP57738 103 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 FAM53AQ6NSI3 398 aaPredicted RBP6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 C12orf54Q6X4T0 127 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 SNRNP40Q96DI7 357 aaKnown RBP6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 NEU1Q99519 415 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 PI4KAP42356 2102 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 FAM90A27PA6NNH2 459 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 SRRM5B3KS81 715 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 MLNRO43193 412 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 CA1P00915 261 aaPredicted RBP6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 SELLP14151 372 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 LGALS7P47929 136 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 PRCDQ00LT1 54 aa6.96□□□□□ -1.29
LIMCH1-216ENST00000512820 LOC102724200A0A096LPH7 203 aaPredicted RBP6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 A0A1B0GUS0 222 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 A6NNC1 897 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 HIGD1CA8MV81 97 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 C9JCJ5 164 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 OR2J3O76001 311 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 LEMD1Q68G75 181 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 GOLT1AQ6ZVE7 132 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 LAMTOR2Q9Y2Q5 125 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 EREGO14944 169 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 PYYP10082 97 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 FAM27E3Q08E93 113 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 GTF2H5Q6ZYL4 71 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 PRDM13Q9H4Q3 707 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 DOCK7Q96N67 2140 aa6.96□□□□□ -1.3
LIMCH1-216ENST00000512820 CD69Q07108 199 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 SSBP4Q9BWG4 385 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 KIF26AQ9ULI4 1882 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 A6NDN8 102 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 HLA-DRB1P01911 266 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 TFPI2P48307 235 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 OR10J3Q5JRS4 329 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 WDR86Q86TI4 376 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 FOXA2Q9Y261 457 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 LTBP2Q14767 1821 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 TMEM189A5PLL7 270 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 J3QR89 54 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 PCP4P48539 62 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 GNG5P63218 68 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 TMEM97Q5BJF2 176 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 ST6GALNAC6Q969X2 333 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 ZFP30Q9Y2G7 519 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 TRAV5A0A0B4J249 113 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 OR4C46A6NHA9 309 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 MYOD1P15172 320 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 S100A4P26447 101 aaKnown RBP6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 FGF23Q9GZV9 251 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 MYO7BQ6PIF6 2116 aa6.95□□□□□ -1.3
LIMCH1-216ENST00000512820 ZNF407Q9C0G0 2248 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 CCL3L1P16619 93 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 MDS2Q8NDY4 140 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 OR10W1Q8NGF6 305 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 LINC00312Q9Y6C7 94 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 LIPFP07098 398 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 CD40P25942 277 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 FCGR2BP31994 310 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 KIR2DL2P43627 348 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 ERVK11-1P61568 191 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 HOXA4Q00056 320 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 GPR82Q96P67 336 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 RPP21Q9H633 154 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 TYMSP04818 313 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 AREGP15514 252 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 UQCRFS1P47985 274 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 MBNL2Q5VZF2 373 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 POLR3KQ9Y2Y1 108 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 HILPDAQ9Y5L2 63 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 NMUP48645 174 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 TCF24Q7RTU0 167 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 RAB1BQ9H0U4 201 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 LY96Q9Y6Y9 160 aa6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 CNOT1A5YKK6 2376 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-216ENST00000512820 LMO1P25800 156 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 TWIST1Q15672 202 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 UFC1Q9Y3C8 167 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 IGKV1D-17A0A075B6S4 117 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 MEF2CQ06413 473 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 KRTAP27-1Q3LI81 207 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 PET117Q6UWS5 81 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 OR10AG1Q8NH19 301 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms