RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 DUX3Q96PT4 197 aa9.44□□□□□ -0.9
LIMCH1-208ENST00000508501 FAM231BA6NCW3 169 aa9.44□□□□□ -0.9
LIMCH1-208ENST00000508501 VCYO14598 125 aa9.44□□□□□ -0.9
LIMCH1-208ENST00000508501 GFI1BQ5VTD9 330 aa9.44□□□□□ -0.9
LIMCH1-208ENST00000508501 GFRA4Q9GZZ7 299 aa9.44□□□□□ -0.9
LIMCH1-208ENST00000508501 RNF115Q9Y4L5 304 aa9.44□□□□□ -0.9
LIMCH1-208ENST00000508501 VEGFBP49765 207 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 CT55Q8WUE5 264 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 STRCQ7RTU9 1775 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 IGHV3OR16-12A0A075B7B8 117 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 H3BTX0 84 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 EREGO14944 169 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 ZIC3O60481 467 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 IGHV2-70P01814 119 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 GTSCR1Q86UQ5 136 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 CMC4P56277 68 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 SPATA31B1PQ5VZV4 182 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 SIVA1O15304 175 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 FOXL2P58012 376 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 MRAPQ8TCY5 172 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 C1orf43Q9BWL3 253 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 SNHG12Q9BXW3 62 aa9.43□□□□□ -0.9
LIMCH1-208ENST00000508501 IGHV3-72A0A0B4J1Y9 119 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 AGFG2O95081 481 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 EVI2AP22794 236 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 SRSF3P84103 164 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 CLEC2AQ6UVW9 174 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 DPM3Q9P2X0 92 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 C15orf61A6NNL5 157 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 MYF5P13349 255 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 SPINK14Q6IE38 97 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 C16orf47Q6ZP98 133 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 LYPD1Q8N2G4 141 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 C12orf77C9JDV5 145 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 EFNB3Q15768 340 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 ZXDCQ2QGD7 858 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 ZC2HC1BQ5TFG8 222 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 SCARF2Q96GP6 870 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 FMN2Q9NZ56 1722 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 ZNF142P52746 1687 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 YPEL1O60688 119 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 IGHG4P01861 327 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 TEX43Q6ZNM6 134 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 YPEL2Q96QA6 119 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 FBXL7Q9UJT9 491 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 KNTC1P50748 2209 aa9.42□□□□□ -0.9
LIMCH1-208ENST00000508501 MYH14Q7Z406 1995 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 PAX4O43316 350 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 FOXS1O43638 330 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 FOXH1O75593 365 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 IGKV1D-16P01601 117 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 C1QTNF4Q9BXJ3 329 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 TRAV8-3A0A0A6YYJ7 113 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 ADARB2-AS1A8MUL3 147 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 H0YIZ8 118 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 KLK10O43240 276 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 REG1AP05451 166 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 CCL8P80075 99 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 OR13A1Q8NGR1 328 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 PILRAQ9UKJ1 303 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 ANAPC10Q9UM13 185 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 J3KT08 172 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 DRD3P35462 400 aa9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 RPL32P62910 135 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-208ENST00000508501 SCN9AQ15858 1988 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 IGKV1D-42A0A075B6H8 117 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 FAM89BQ8N5H3 189 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 C8orf46Q8TAG6 207 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 KLF14Q8TD94 323 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 IGLC2P0DOY2 106 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 IGLC3P0DOY3 106 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 SPEM2Q0P670 501 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 PMS2CLQ68D20 193 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 OR11H6Q8NGC7 330 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 RNF125Q96EQ8 232 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 C17orf98A8MV24 154 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 TRGV3P03979 118 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 PRCDQ00LT1 54 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 LILRA6Q6PI73 481 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 TTTY12Q9BZ98 90 aa9.4□□□□□ -0.9
LIMCH1-208ENST00000508501 FNDC10F2Z333 226 aa9.4□□□□□ -0.91
LIMCH1-208ENST00000508501 RAMP3O60896 148 aa9.4□□□□□ -0.91
LIMCH1-208ENST00000508501 RBM3P98179 157 aaKnown RBP9.4□□□□□ -0.91
LIMCH1-208ENST00000508501 TMEM256Q8N2U0 113 aa9.4□□□□□ -0.91
LIMCH1-208ENST00000508501 LY6G5BQ8NDX9 201 aa9.4□□□□□ -0.91
LIMCH1-208ENST00000508501 hDV102S1A0JD36 115 aa9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 SHISA3A0PJX4 238 aa9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 DPH3P1Q9H4G8 78 aa9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 FOXA2Q9Y261 457 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 ACP7Q6ZNF0 438 aa9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 CYTL1Q9NRR1 136 aa9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 CRIM1Q9NZV1 1036 aa9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 POLR3KQ9Y2Y1 108 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 ANKRD29Q8N6D5 301 aa9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 PEMTQ9UBM1 199 aa9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 NUP205Q92621 2012 aa9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 CD7P09564 240 aa9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 LYL1P12980 280 aa9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 AZU1P20160 251 aa9.39□□□□□ -0.91
LIMCH1-208ENST00000508501 LINC00312Q9Y6C7 94 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms