RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 MFAP2P55001 183 aa15.47■□□□□ 0.07
SQSTM1-210ENST00000506042 PRCDQ00LT1 54 aa15.47■□□□□ 0.07
SQSTM1-210ENST00000506042 GBGT1Q8N5D6 347 aa15.47■□□□□ 0.07
SQSTM1-210ENST00000506042 VCX3AQ9NNX9 186 aa15.47■□□□□ 0.07
SQSTM1-210ENST00000506042 MT-CO2P00403 227 aa15.46■□□□□ 0.07
SQSTM1-210ENST00000506042 CLEC2LP0C7M8 214 aa15.46■□□□□ 0.07
SQSTM1-210ENST00000506042 NANOS2P60321 138 aaKnown RBP15.46■□□□□ 0.07
SQSTM1-210ENST00000506042 ZNF600Q6ZNG1 722 aa15.46■□□□□ 0.07
SQSTM1-210ENST00000506042 GRAMD2BQ96HH9 432 aa15.46■□□□□ 0.07
SQSTM1-210ENST00000506042 ALMS1Q8TCU4 4167 aa15.46■□□□□ 0.06
SQSTM1-210ENST00000506042 F8W735 103 aaPredicted RBP15.45■□□□□ 0.06
SQSTM1-210ENST00000506042 DEDDO75618 318 aa15.45■□□□□ 0.06
SQSTM1-210ENST00000506042 HSPE1P61604 102 aaKnown RBP15.45■□□□□ 0.06
SQSTM1-210ENST00000506042 MORN3Q6PF18 240 aaPredicted RBP15.45■□□□□ 0.06
SQSTM1-210ENST00000506042 SLC35G3Q8N808 338 aa15.45■□□□□ 0.06
SQSTM1-210ENST00000506042 SAMD12Q8N8I0 201 aa15.45■□□□□ 0.06
SQSTM1-210ENST00000506042 HRH4Q9H3N8 390 aa15.45■□□□□ 0.06
SQSTM1-210ENST00000506042 ENY2Q9NPA8 101 aa15.45■□□□□ 0.06
SQSTM1-210ENST00000506042 IGHV3-49A0A0A0MS15 119 aa15.44■□□□□ 0.06
SQSTM1-210ENST00000506042 I3L2K1 104 aa15.44■□□□□ 0.06
SQSTM1-210ENST00000506042 SPP1P10451 314 aa15.44■□□□□ 0.06
SQSTM1-210ENST00000506042 NAT1P18440 290 aa15.44■□□□□ 0.06
SQSTM1-210ENST00000506042 NPPCP23582 126 aa15.44■□□□□ 0.06
SQSTM1-210ENST00000506042 TAS2R20P59543 309 aa15.44■□□□□ 0.06
SQSTM1-210ENST00000506042 KCTD21Q4G0X4 260 aa15.44■□□□□ 0.06
SQSTM1-210ENST00000506042 PHLDA2Q53GA4 152 aa15.44■□□□□ 0.06
SQSTM1-210ENST00000506042 RABAC1Q9UI14 185 aa15.44■□□□□ 0.06
SQSTM1-210ENST00000506042 HRH1P35367 487 aa15.43■□□□□ 0.06
SQSTM1-210ENST00000506042 NEDD8Q15843 81 aa15.43■□□□□ 0.06
SQSTM1-210ENST00000506042 TBC1D26Q86UD7 250 aa15.43■□□□□ 0.06
SQSTM1-210ENST00000506042 METTL26Q96S19 204 aa15.43■□□□□ 0.06
SQSTM1-210ENST00000506042 FXYD6Q9H0Q3 95 aa15.43■□□□□ 0.06
SQSTM1-210ENST00000506042 MS4A6AQ9H2W1 248 aa15.43■□□□□ 0.06
SQSTM1-210ENST00000506042 SCPEP1Q9HB40 452 aa15.43■□□□□ 0.06
SQSTM1-210ENST00000506042 ANAPC10Q9UM13 185 aa15.43■□□□□ 0.06
SQSTM1-210ENST00000506042 IGLL5B9A064 214 aa15.42■□□□□ 0.06
SQSTM1-210ENST00000506042 MIFP14174 115 aa15.42■□□□□ 0.06
SQSTM1-210ENST00000506042 DEFB131AP59861 70 aa15.42■□□□□ 0.06
SQSTM1-210ENST00000506042 FAM90A2PQ658T7 463 aa15.42■□□□□ 0.06
SQSTM1-210ENST00000506042 VSIRQ9H7M9 311 aa15.42■□□□□ 0.06
SQSTM1-210ENST00000506042 IFNA17P01571 189 aa15.41■□□□□ 0.06
SQSTM1-210ENST00000506042 HLA-DMAP28067 261 aa15.41■□□□□ 0.06
SQSTM1-210ENST00000506042 AKR1C2P52895 323 aa15.41■□□□□ 0.06
SQSTM1-210ENST00000506042 UCP3P55916 312 aa15.41■□□□□ 0.06
SQSTM1-210ENST00000506042 TOMM20LQ6UXN7 152 aa15.41■□□□□ 0.06
SQSTM1-210ENST00000506042 SEC22AQ96IW7 307 aa15.41■□□□□ 0.06
SQSTM1-210ENST00000506042 RNF167Q9H6Y7 350 aa15.41■□□□□ 0.06
SQSTM1-210ENST00000506042 PUS1Q9Y606 427 aaKnown RBP eCLIP15.41■□□□□ 0.06
SQSTM1-210ENST00000506042 HYDINQ4G0P3 5121 aa15.4■□□□□ 0.06
SQSTM1-210ENST00000506042 IGHV3OR16-13A0A075B7E8 117 aa15.4■□□□□ 0.06
SQSTM1-210ENST00000506042 IGHV3-74A0A0B4J1X5 117 aa15.4■□□□□ 0.06
SQSTM1-210ENST00000506042 RCVRNP35243 200 aa15.4■□□□□ 0.06
SQSTM1-210ENST00000506042 NUTF2P61970 127 aaKnown RBP15.4■□□□□ 0.06
SQSTM1-210ENST00000506042 ZNF124Q15973 351 aa15.4■□□□□ 0.06
SQSTM1-210ENST00000506042 ST8SIA2Q92186 375 aa15.4■□□□□ 0.06
SQSTM1-210ENST00000506042 TMEM230Q96A57 120 aa15.4■□□□□ 0.06
SQSTM1-210ENST00000506042 MRGPRFQ96AM1 343 aa15.4■□□□□ 0.06
SQSTM1-210ENST00000506042 ZNF486Q96H40 463 aaPredicted RBP15.4■□□□□ 0.06
SQSTM1-210ENST00000506042 TRAV30A0A087WSZ9 112 aa15.39■□□□□ 0.05
SQSTM1-210ENST00000506042 TRAV10A0A0B4J240 114 aa15.39■□□□□ 0.05
SQSTM1-210ENST00000506042 AP2S1P53680 142 aaPredicted RBP15.39■□□□□ 0.05
SQSTM1-210ENST00000506042 LEMD1Q68G75 181 aa15.39■□□□□ 0.05
SQSTM1-210ENST00000506042 LINC00336Q6ZUF6 198 aa15.39■□□□□ 0.05
SQSTM1-210ENST00000506042 STXBP6Q8NFX7 210 aa15.39■□□□□ 0.05
SQSTM1-210ENST00000506042 RNASE11Q8TAA1 199 aaKnown RBP15.39■□□□□ 0.05
SQSTM1-210ENST00000506042 C1QTNF4Q9BXJ3 329 aa15.39■□□□□ 0.05
SQSTM1-210ENST00000506042 RPS10-NUDT3A0A1W2PQS6 291 aa15.38■□□□□ 0.05
SQSTM1-210ENST00000506042 PGAM2P15259 253 aa15.38■□□□□ 0.05
SQSTM1-210ENST00000506042 HOXA1P49639 335 aaPredicted RBP15.38■□□□□ 0.05
SQSTM1-210ENST00000506042 RRNAD1Q96FB5 475 aaKnown RBP15.38■□□□□ 0.05
SQSTM1-210ENST00000506042 ZNF414Q96IQ9 312 aa15.38■□□□□ 0.05
SQSTM1-210ENST00000506042 HELTA6NFD8 242 aa15.37■□□□□ 0.05
SQSTM1-210ENST00000506042 OPRK1P41145 380 aa15.37■□□□□ 0.05
SQSTM1-210ENST00000506042 DBX1A6NMT0 343 aa15.36■□□□□ 0.05
SQSTM1-210ENST00000506042 INS-IGF2F8WCM5 200 aa15.36■□□□□ 0.05
SQSTM1-210ENST00000506042 B3GALNT1O75752 331 aa15.36■□□□□ 0.05
SQSTM1-210ENST00000506042 IGHV3-48P01763 117 aa15.36■□□□□ 0.05
SQSTM1-210ENST00000506042 APOA1P02647 267 aa15.36■□□□□ 0.05
SQSTM1-210ENST00000506042 CCDC71LQ8N9Z2 235 aa15.36■□□□□ 0.05
SQSTM1-210ENST00000506042 GPX8Q8TED1 209 aa15.36■□□□□ 0.05
SQSTM1-210ENST00000506042 DEFB4AO15263 64 aa15.35■□□□□ 0.05
SQSTM1-210ENST00000506042 TMEM50AO95807 157 aa15.35■□□□□ 0.05
SQSTM1-210ENST00000506042 NPY1RP25929 384 aa15.35■□□□□ 0.05
SQSTM1-210ENST00000506042 TRIM16LQ309B1 348 aa15.35■□□□□ 0.05
SQSTM1-210ENST00000506042 CACFD1Q9UGQ2 172 aa15.35■□□□□ 0.05
SQSTM1-210ENST00000506042 IGHV3-66A0A0C4DH42 116 aa15.34■□□□□ 0.05
SQSTM1-210ENST00000506042 CLN5O75503 358 aa15.34■□□□□ 0.05
SQSTM1-210ENST00000506042 ATP6V1G2O95670 118 aa15.34■□□□□ 0.05
SQSTM1-210ENST00000506042 P2RY1P47900 373 aa15.34■□□□□ 0.05
SQSTM1-210ENST00000506042 SNRPD3P62318 126 aaKnown RBP15.34■□□□□ 0.05
SQSTM1-210ENST00000506042 RNASE10Q5GAN6 216 aaKnown RBP15.34■□□□□ 0.05
SQSTM1-210ENST00000506042 LYSMD2Q8IV50 215 aa15.34■□□□□ 0.05
SQSTM1-210ENST00000506042 ZFAND1Q8TCF1 268 aa15.34■□□□□ 0.05
SQSTM1-210ENST00000506042 ZFAND3Q9H8U3 227 aa15.34■□□□□ 0.05
SQSTM1-210ENST00000506042 COPZ2Q9P299 210 aa15.34■□□□□ 0.05
SQSTM1-210ENST00000506042 PFDN2Q9UHV9 154 aa15.34■□□□□ 0.05
SQSTM1-210ENST00000506042 TBC1D24Q9ULP9 559 aa15.34■□□□□ 0.05
SQSTM1-210ENST00000506042 IGHV4-28A0A0C4DH34 117 aa15.33■□□□□ 0.04
SQSTM1-210ENST00000506042 HLA-DMBP28068 263 aa15.33■□□□□ 0.04
SQSTM1-210ENST00000506042 RPS19P39019 145 aaKnown RBP15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms