RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 CDX1P47902 265 aaPredicted RBP7.78□□□□□ -1.16
NUP54-203ENST00000504173 SUB1P53999 127 aaKnown RBP eCLIP7.78□□□□□ -1.16
NUP54-203ENST00000504173 ATP5G2Q06055 141 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 KIAA0141Q14154 515 aaPredicted RBP7.78□□□□□ -1.16
NUP54-203ENST00000504173 C18orf65Q6ZTR6 163 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 ZNF491Q8N8L2 437 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 NECAP1Q8NC96 275 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 SLC24A4Q8NFF2 622 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 OR1P1Q8NH06 330 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 MRAPQ8TCY5 172 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 USMG5Q96IX5 58 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 C2orf50Q96LR7 162 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 FANCD2OSQ96PS1 177 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 OR5B12Q96R08 314 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 MED28Q9H204 178 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 GNB4Q9HAV0 340 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 THYN1Q9P016 225 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 FBXL7Q9UJT9 491 aa7.78□□□□□ -1.16
NUP54-203ENST00000504173 SSSCA1O60232 199 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 NDUFB8O95169 186 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 SIX6O95475 246 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 RNASE2P10153 161 aaKnown RBP7.77□□□□□ -1.17
NUP54-203ENST00000504173 HTR2BP41595 481 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 MFAP2P55001 183 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 POLR2GP62487 172 aaKnown RBP eCLIP7.77□□□□□ -1.17
NUP54-203ENST00000504173 ID3Q02535 119 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 EXOSC2Q13868 293 aaKnown RBP7.77□□□□□ -1.17
NUP54-203ENST00000504173 KLK9Q2XQG4 91 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 C15orf32Q32M92 178 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 C11orf87Q6NUJ2 197 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 C8orf86Q6ZUL3 223 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 C4orf3Q8WVX3 66 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 MISP3Q96FF7 219 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 CIB3Q96Q77 187 aaPredicted RBP7.77□□□□□ -1.17
NUP54-203ENST00000504173 KLK9Q9UKQ9 250 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 DMRT1Q9Y5R6 373 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 HERC2O95714 4834 aa7.77□□□□□ -1.17
NUP54-203ENST00000504173 DNAH3Q8TD57 4116 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 LY86O95711 162 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 IFNA10P01566 189 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 MBPP02686 304 aaPredicted RBP7.76□□□□□ -1.17
NUP54-203ENST00000504173 LGALS1P09382 135 aaKnown RBP7.76□□□□□ -1.17
NUP54-203ENST00000504173 NPY1RP25929 384 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 S100A10P60903 97 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 BSXQ3C1V8 233 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 NOXA1Q86UR1 476 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 OR4F17Q8NGA8 305 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 EEF1AKMT3Q96AZ1 226 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 PINX1Q96BK5 328 aaKnown RBP7.76□□□□□ -1.17
NUP54-203ENST00000504173 CXorf58Q96LI9 332 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 OR4F4Q96R69 305 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 PAIP2BQ9ULR5 123 aaKnown RBP7.76□□□□□ -1.17
NUP54-203ENST00000504173 LSM5Q9Y4Y9 91 aaKnown RBP7.76□□□□□ -1.17
NUP54-203ENST00000504173 S4R3C0 116 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 U3KQ87 197 aa7.76□□□□□ -1.17
NUP54-203ENST00000504173 IGHV3-21A0A0B4J1V1 117 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 MFSD2BA6NFX1 497 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 G3V4G9 280 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 I3L521 148 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 K7EPK0 472 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 CORTO00230 105 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 IGHV3-23P01764 117 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 PRB2P02812 416 aaPredicted RBP7.75□□□□□ -1.17
NUP54-203ENST00000504173 RPP30P78346 268 aaKnown RBP7.75□□□□□ -1.17
NUP54-203ENST00000504173 CYCSP99999 105 aaKnown RBP7.75□□□□□ -1.17
NUP54-203ENST00000504173 RUNX1Q01196 453 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 FCN2Q15485 313 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 DEFB136Q30KP8 78 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 C2orf83Q53S99 150 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 SAMD5Q5TGI4 173 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 ZNF343Q6P1L6 599 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 RAB40CQ96S21 281 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 NMES1Q9C002 83 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 RCL1Q9Y2P8 373 aaKnown RBP7.75□□□□□ -1.17
NUP54-203ENST00000504173 DNAH9Q9NYC9 4486 aa7.75□□□□□ -1.17
NUP54-203ENST00000504173 ANKRD34BA5PLL1 514 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 H3BP45 60 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 K7EIM0 57 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 L7N2F9 121 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 CCL24O00175 119 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 TSPAN15O95858 294 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 MT-CO2P00403 227 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 PF4P02776 101 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 IFNA4P05014 189 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 OR8U8P0C7N1 319 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 PVALBP20472 110 aaPredicted RBP7.74□□□□□ -1.17
NUP54-203ENST00000504173 OPRK1P41145 380 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 ATP5IP56385 69 aaPredicted RBP7.74□□□□□ -1.17
NUP54-203ENST00000504173 H2BFSP57053 126 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 RRAS2P62070 204 aaPredicted RBP7.74□□□□□ -1.17
NUP54-203ENST00000504173 RAB11AP62491 216 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 VAMP2P63027 116 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 RAB32Q13637 225 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 FAM209BQ5JX69 171 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 SPANXN5Q5MJ07 72 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 PVRIGQ6DKI7 326 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 OR11H1Q8NG94 326 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 OR11H7Q8NGC8 314 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 OR1N2Q8NGR9 330 aa7.74□□□□□ -1.17
NUP54-203ENST00000504173 RNASEH2CQ8TDP1 164 aaKnown RBP7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms