RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 POLEQ07864 2286 aa13.14□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 HIVEP3Q5T1R4 2406 aa13.14□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 TRGV10A0A0A0MS01 117 aa13.14□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 IGHV1-46P01743 117 aa13.14□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 RPL31P62899 125 aaKnown RBP13.14□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 OR10G8Q8NGN5 311 aa13.14□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 ADTRPQ96IZ2 230 aa13.14□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 LINC00574Q9H8X3 128 aa13.14□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 RAB9BQ9NP90 201 aa13.14□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 OR51B2Q9Y5P1 312 aa13.14□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 ICE1Q9Y2F5 2266 aa13.14□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 FAM208BQ5VWN6 2430 aa13.14□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 A0A1B0GUS0 222 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 BRS3P32247 399 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 YPEL3P61236 119 aaPredicted RBP13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 HLA-DRB5Q30154 266 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 LEMD1Q68G75 181 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 DEFB108BQ8NET1 73 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 CCL13Q99616 98 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 ENY2Q9NPA8 101 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 SPTBN1Q01082 2364 aaKnown RBP13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 SRRM4A7MD48 611 aaKnown RBP13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 FNDC10F2Z333 226 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 NUPR1O60356 82 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 CT45A6P0DMU7 189 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 CT45A5P0DMU8 189 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 CT45A7P0DMV0 189 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 MIR17HGQ75NE6 70 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 TMEM256Q8N2U0 113 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 OR4P4Q8NGL7 312 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 SLC45A2Q9UMX9 530 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 TNCP24821 2201 aa13.13□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 SPTAN1Q13813 2472 aaKnown RBP13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 UPK2O00526 184 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 CCKARP32238 428 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 TNFAIP6P98066 277 aaPredicted RBP13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 ZNF788Q6ZQV5 615 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 MOB3BQ86TA1 216 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 FAM216BQ8N7L0 139 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 HINT2Q9BX68 163 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 ZNRD1Q9P1U0 126 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 IL19Q9UHD0 177 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 DYSFO75923 2080 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 ADMP35318 185 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 PRCDQ00LT1 54 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 RAB31Q13636 194 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 CORO2AQ92828 525 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 DNAJC4Q9NNZ3 241 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 PRNDQ9UKY0 176 aa13.12□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 IGKV1OR2-108A0A075B7D4 117 aa13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 C9JCJ5 164 aa13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 J3QR06 171 aa13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 IGKV1-16P04430 117 aa13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 AREGP15514 252 aa13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 SLC25A48Q6ZT89 311 aaKnown RBP13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 SFXN3Q9BWM7 321 aa13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 IL36BQ9NZH7 164 aa13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 RPUSD1Q9UJJ7 312 aaKnown RBP13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 ZNF257Q9Y2Q1 563 aa13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 SLC17A3O00476 420 aa13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 IRF2P14316 349 aa13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 SELENOTP62341 195 aa13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 C1orf185Q5T7R7 199 aa13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 MRPL41Q8IXM3 137 aaKnown RBP13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 SLC25A10Q9UBX3 287 aaPredicted RBP13.11□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 PLCE1Q9P212 2302 aa13.1□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 TEX50A0A1B0GTY4 177 aa13.1□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 ACTL6BO94805 426 aa13.1□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 MT-CO2P00403 227 aa13.1□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 PPBPP02775 128 aa13.1□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 OR4A8P0C604 315 aa13.1□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 ZNF503Q96F45 646 aa13.1□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 EAF1Q96JC9 268 aaPredicted RBP13.1□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 NABP2Q9BQ15 211 aa13.1□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 PLEKHA3Q9HB20 300 aa13.1□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 LY96Q9Y6Y9 160 aa13.1□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 NKX6-3A6NJ46 265 aa13.09□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 FAM27E3Q08E93 113 aa13.09□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 OR5I1Q13606 314 aa13.09□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 C16orf54Q6UWD8 224 aa13.09□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 SLC35D1Q9NTN3 355 aa13.09□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 TP53TG3Q9ULZ0 132 aa13.09□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 CRYBG3Q68DQ2 2970 aa13.09□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 ZNF90Q03938 601 aa13.09□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 MLANAQ16655 118 aa13.09□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 COL5A1-AS1Q5SY13 56 aa13.09□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 UHRF2Q96PU4 802 aa13.09□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 TRAV9-1A0A075B6T8 112 aa13.08□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 C20orf202A1L168 122 aa13.08□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 NDUFS8O00217 210 aa13.08□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 GATA2P23769 480 aaPredicted RBP13.08□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 KLRB1Q12918 225 aa13.08□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 PSG5Q15238 335 aa13.08□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 TEX36Q5VZQ5 186 aa13.08□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 ARL2-SNX15V9GYD0 113 aa13.08□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 CBLN1P23435 193 aa13.08□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 CD40P25942 277 aa13.08□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 LGALS4P56470 323 aa13.08□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 C2orf83Q53S99 150 aa13.08□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 NUDT10Q8NFP7 164 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms