RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 FAM89BQ8N5H3 189 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 TTC9CQ8N5M4 171 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 LFNGQ8NES3 379 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 OR4A4PQ8NGN8 299 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 OR1L6Q8NGR2 347 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 OR13C5Q8NGS8 318 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 OR4A5Q8NH83 315 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 MRPL30Q8TCC3 161 aaKnown RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 DYNC2LI1Q8TCX1 351 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 DYNLRB2Q8TF09 96 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 LEAP2Q969E1 77 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 RFT1Q96AA3 541 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 ABHD14BQ96IU4 210 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 PRAC1Q96KF2 57 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 PGLYRP3Q96LB9 341 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 SGK494Q96LW2 274 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 PDCD1LG2Q9BQ51 273 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 CABLES2Q9BTV7 478 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 MND1Q9BWT6 205 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 TMEM59Q9BXS4 323 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 MRPL20Q9BYC9 149 aaKnown RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 C11orf68Q9H3H3 251 aaKnown RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 C5orf66Q9H5L9 145 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 VCX3AQ9NNX9 186 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 PLEKHJ1Q9NW61 149 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 NDUFB11Q9NX14 153 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 NDUFA13Q9P0J0 144 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 MRPL27Q9P0M9 148 aaKnown RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 METTL1Q9UBP6 276 aaKnown RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 MRPS7Q9Y2R9 242 aaKnown RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 TRAV2A0A0B4J234 112 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 LOC100506127A0A0U1RQW1 187 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 MEX3AA1L020 520 aaKnown RBP2.85□□□□□ -1.95
USP54-217ENST00000498213 SMIM30A4D0T7 59 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 MSGN1A6NI15 193 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 OR11H12B2RN74 326 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 ZNF736B4DX44 427 aaPredicted RBP2.85□□□□□ -1.95
USP54-217ENST00000498213 K7EMT4 169 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 ARL6IP5O75915 188 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 CDRT1O95170 752 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 CA2P00918 260 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 CRYGCP07315 174 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 CRYGBP07316 175 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 C8orf88P0DMB2 117 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 VPREB1P12018 145 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 RCC1P18754 421 aaPredicted RBP2.85□□□□□ -1.95
USP54-217ENST00000498213 CELP19835 753 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 SYNJ2BPP57105 145 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 RPS11P62280 158 aaKnown RBP eCLIP2.85□□□□□ -1.95
USP54-217ENST00000498213 LRP2P98164 4655 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 ATP5G2Q06055 141 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 LTC4SQ16873 150 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 DEFB114Q30KQ6 69 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 ZNF57Q68EA5 555 aaPredicted RBP2.85□□□□□ -1.95
USP54-217ENST00000498213 LAMTOR1Q6IAA8 161 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 TMEM91Q6ZNR0 172 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 C5orf24Q7Z6I8 188 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 BATF2Q8N1L9 274 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 JAGN1Q8N5M9 183 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 OR56B1Q8NGI3 324 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 OR6M1Q8NGM8 313 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 OR10AC1Q8NH08 325 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 OR4K15Q8NH41 348 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 OR1L1Q8NH94 360 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 CD300LFQ8TDQ1 290 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 RAB2BQ8WUD1 216 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 PHLDA1Q8WV24 401 aaPredicted RBP2.85□□□□□ -1.95
USP54-217ENST00000498213 UFD1Q92890 307 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 TMEM203Q969S6 136 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 NICN1Q9BSH3 213 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 SELENOIQ9C0D9 397 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 SLIRPQ9GZT3 109 aaKnown RBP2.85□□□□□ -1.95
USP54-217ENST00000498213 FBXL15Q9H469 300 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 TXNL4BQ9NX01 149 aaKnown RBP2.85□□□□□ -1.95
USP54-217ENST00000498213 TAS2R4Q9NYW5 299 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 FBXL17Q9UF56 701 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 PRELID3BQ9Y3B1 194 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 UFC1Q9Y3C8 167 aa2.85□□□□□ -1.95
USP54-217ENST00000498213 TEX48A0A1B0GUV7 120 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 A0A1W2PPE3 182 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 OR4C46A6NHA9 309 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 C2orf70A6NJV1 201 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 KRTAP16-1A8MUX0 517 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 TMEM14DPA8MWL7 114 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 TRDCB7Z8K6 153 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 SLC31A2O15432 143 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 RBFOX2O43251 390 aaKnown RBP eCLIP2.84□□□□□ -1.95
USP54-217ENST00000498213 CRTAPO75718 401 aaPredicted RBP2.84□□□□□ -1.95
USP54-217ENST00000498213 DFFBO76075 338 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 HRASP01112 189 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 IGHV3-7P01780 117 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 IFNA4P05014 189 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 FOLR2P14207 255 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 CBLN1P23435 193 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 HTR2CP28335 458 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 PPP1CCP36873 323 aaKnown RBP2.84□□□□□ -1.95
USP54-217ENST00000498213 CEACAM6P40199 344 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 HLA-DRB3P79483 266 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 NDPQ00604 133 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 ARFRP1Q13795 201 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms