RNA–Protein interactions for RNA: ENST00000497978.1

NUDCD3-211, Transcript of NudC domain containing 3, humanhuman

TSL 4

Gene NUDCD3, Length 659 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-211ENST00000497978 TMEM116Q8NCL8 245 aa8.73□□□□□ -1.01
NUDCD3-211ENST00000497978 MRGPRFQ96AM1 343 aa8.73□□□□□ -1.01
NUDCD3-211ENST00000497978 GALNT14Q96FL9 552 aa8.73□□□□□ -1.01
NUDCD3-211ENST00000497978 TRAV14DV4A0A0A6YYC5 116 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 NUPR2A6NF83 97 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 I3L2K1 104 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 CHEK1O14757 476 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 GNG7O60262 68 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 HPGDSO60760 199 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 ATG12O94817 140 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 MT-CO2P00403 227 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 IGKV1-39P01597 117 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 IGKV1D-39P04432 117 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 RPL35AP18077 110 aaKnown RBP8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 FCGR2BP31994 310 aaPredicted RBP8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 TNFRSF9Q07011 255 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 PMS2P11Q13670 270 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 LYG2Q86SG7 212 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 TMEM217Q8N7C4 229 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 AP3S1Q92572 193 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 PINX1Q96BK5 328 aaKnown RBP8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 ZNF486Q96H40 463 aaPredicted RBP8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 OR10C1Q96KK4 312 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 RNF2Q99496 336 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 RHPN1-AS1Q9BWJ2 59 aa8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 EPPK1P58107 5090 aaKnown RBP8.72□□□□□ -1.01
NUDCD3-211ENST00000497978 CSMD3Q7Z407 3707 aa8.71□□□□□ -1.01
NUDCD3-211ENST00000497978 M0QYG6 137 aa8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 CD5P06127 495 aa8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 SNCAP37840 140 aa8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 NPBWR1P48145 328 aa8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 RND3P61587 244 aa8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 PAFAH1B2P68402 229 aa8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 RNASE10Q5GAN6 216 aaKnown RBP8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 SLC35G3Q8N808 338 aa8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 DUSP18Q8NEJ0 188 aa8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 RNF183Q96D59 192 aa8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 GINS3Q9BRX5 216 aa8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 PDCD10Q9BUL8 212 aa8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 NXF2Q9GZY0 626 aaKnown RBP8.71□□□□□ -1.02
NUDCD3-211ENST00000497978 IGHV3-49A0A0A0MS15 119 aa8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 IFNA17P01571 189 aa8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 IGHV3-48P01763 117 aa8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 ATF4P18848 351 aaPredicted RBP8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 TBPP20226 339 aa8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 TFPI2P48307 235 aa8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 AKR1C2P52895 323 aa8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 SUB1P53999 127 aaKnown RBP eCLIP8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 PIGPP57054 158 aa8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 RNASE12Q5GAN4 147 aaKnown RBP8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 APRG1Q8IVJ8 170 aa8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 ARRDC1Q8N5I2 433 aa8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 ZFAND1Q8TCF1 268 aa8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 C15orf40Q8WUR7 153 aa8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 MRPL18Q9H0U6 180 aaKnown RBP8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 MAP6D1Q9H9H5 199 aa8.7□□□□□ -1.02
NUDCD3-211ENST00000497978 STARD9Q9P2P6 4700 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 IGKV3-7A0A075B6H7 116 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 CORTO00230 105 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 SCGB2A1O75556 95 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 LY6G6CO95867 125 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 CD3DP04234 171 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 ZNF182P17025 639 aaPredicted RBP8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 PI3P19957 117 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 IZUMO4Q1ZYL8 232 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 TRIM16LQ309B1 348 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 SPINK9Q5DT21 86 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 CEMP1Q6PRD7 247 aaPredicted RBP8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 CCDC71LQ8N9Z2 235 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 LINC00476Q8WZB0 136 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 CSTL1Q9H114 145 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 ENY2Q9NPA8 101 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 COPZ2Q9P299 210 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 EXTL2Q9UBQ6 330 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 KLK11Q9UBX7 282 aa8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 KLK5Q9Y337 293 aaPredicted RBP8.69□□□□□ -1.02
NUDCD3-211ENST00000497978 LYSTQ99698 3801 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 BIRC6Q9NR09 4857 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 IGHV3OR16-13A0A075B7E8 117 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 IGHV3-74A0A0B4J1X5 117 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 C3orf85A0A1B0GTC6 90 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 MPTX1A8MV57 137 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 INS-IGF2F8WCM5 200 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 DNASE2O00115 360 aaPredicted RBP8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 ST8SIA3O43173 380 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 B3GALNT1O75752 331 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 IGKV1-5P01602 117 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 HOXA1P49639 335 aaPredicted RBP8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 TOMM20LQ6UXN7 152 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 ZNF600Q6ZNG1 722 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 TCF24Q7RTU0 167 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 LHFPL1Q86WI0 220 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 GBGT1Q8N5D6 347 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 OR52I2Q8NH67 350 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 RNASE11Q8TAA1 199 aaKnown RBP8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 GATAD1Q8WUU5 269 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 RRNAD1Q96FB5 475 aaKnown RBP8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 ZNF414Q96IQ9 312 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 TP53RKQ96S44 253 aa8.68□□□□□ -1.02
NUDCD3-211ENST00000497978 TMEM231Q9H6L2 316 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms