RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 WDR89Q96FK6 387 aaPredicted RBP9.23□□□□□ -0.93
CUX1-210ENST00000497815 DUX3Q96PT4 197 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 THYN1Q9P016 225 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 PAIP2BQ9ULR5 123 aaKnown RBP9.23□□□□□ -0.93
CUX1-210ENST00000497815 RCL1Q9Y2P8 373 aaKnown RBP9.23□□□□□ -0.93
CUX1-210ENST00000497815 TENM1Q9UKZ4 2725 aa9.22□□□□□ -0.93
CUX1-210ENST00000497815 MFSD2BA6NFX1 497 aa9.22□□□□□ -0.93
CUX1-210ENST00000497815 IGHV3-48P01763 117 aa9.22□□□□□ -0.93
CUX1-210ENST00000497815 CXCL3P19876 107 aa9.22□□□□□ -0.93
CUX1-210ENST00000497815 NPY1RP25929 384 aa9.22□□□□□ -0.93
CUX1-210ENST00000497815 LRRC37A5PQ49AS3 106 aa9.22□□□□□ -0.93
CUX1-210ENST00000497815 OR11H7Q8NGC8 314 aa9.22□□□□□ -0.93
CUX1-210ENST00000497815 C4orf3Q8WVX3 66 aa9.22□□□□□ -0.93
CUX1-210ENST00000497815 USMG5Q96IX5 58 aa9.22□□□□□ -0.93
CUX1-210ENST00000497815 COL6A5A8TX70 2615 aa9.22□□□□□ -0.93
CUX1-210ENST00000497815 K7EPK0 472 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 L7N2F9 121 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 TSPAN15O95858 294 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 LGALS1P09382 135 aaKnown RBP9.21□□□□□ -0.94
CUX1-210ENST00000497815 RRAS2P62070 204 aaPredicted RBP9.21□□□□□ -0.94
CUX1-210ENST00000497815 VAMP2P63027 116 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 RAB32Q13637 225 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 BSXQ3C1V8 233 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 C2orf83Q53S99 150 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 SPANXN5Q5MJ07 72 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 UBAC2Q8NBM4 344 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 TMEM170AQ8WVE7 144 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 EEF1AKMT3Q96AZ1 226 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 CIB3Q96Q77 187 aaPredicted RBP9.21□□□□□ -0.94
CUX1-210ENST00000497815 PSENENQ9NZ42 101 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 U3KQ87 197 aa9.21□□□□□ -0.94
CUX1-210ENST00000497815 C15orf62A8K5M9 175 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 I3L521 148 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 K7EIM0 57 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 M0QZ24 198 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 TMEM50AO95807 157 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 MT-CO2P00403 227 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 IFNA4P05014 189 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 OR8U8P0C7N1 319 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 OPRK1P41145 380 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 PAX9P55771 341 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 RPP30P78346 268 aaKnown RBP9.2□□□□□ -0.94
CUX1-210ENST00000497815 CYCSP99999 105 aaKnown RBP9.2□□□□□ -0.94
CUX1-210ENST00000497815 IL15RAQ13261 267 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 MLANAQ16655 118 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 KLK9Q2XQG4 91 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 ZNF343Q6P1L6 599 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 CLEC19AQ6UXS0 136 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 OR11H1Q8NG94 326 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 OR4F17Q8NGA8 305 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 SCARB1Q8WTV0 552 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 RAX2Q96IS3 184 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 CXorf58Q96LI9 332 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 OR4C12Q96R67 309 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 OR4F4Q96R69 305 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 RAB40CQ96S21 281 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 NMES1Q9C002 83 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 ZC4H2Q9NQZ6 224 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 KLK9Q9UKQ9 250 aa9.2□□□□□ -0.94
CUX1-210ENST00000497815 hCG_2014768A0A024R1R8 64 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 IGHV4OR15-8A0A075B7B6 117 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 A0A087WW49 117 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 PPP5D1E7EU14 171 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 I3L2K1 104 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 CCL24O00175 119 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 CORTO00230 105 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 TRBV12-3P01733 135 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 PF4P02776 101 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 PVALBP20472 110 aaPredicted RBP9.19□□□□□ -0.94
CUX1-210ENST00000497815 GPR183P32249 361 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 BCAP31P51572 246 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 RAB11AP62491 216 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 Q56UQ5 140 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 PVRIGQ6DKI7 326 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 Q6ZNX1 250 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 NOXA1Q86UR1 476 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 OR1N2Q8NGR9 330 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 VN1R17PQ8TDU5 208 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 DPF1Q92782 380 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 SMIM8Q96KF7 97 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 CCDC140Q96MF4 163 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 ZNF436Q9C0F3 470 aaPredicted RBP9.19□□□□□ -0.94
CUX1-210ENST00000497815 C21orf62Q9NYP8 219 aa9.19□□□□□ -0.94
CUX1-210ENST00000497815 PEF1Q9UBV8 284 aaKnown RBP9.19□□□□□ -0.94
CUX1-210ENST00000497815 STRAPQ9Y3F4 350 aaKnown RBP9.19□□□□□ -0.94
CUX1-210ENST00000497815 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.18□□□□□ -0.94
CUX1-210ENST00000497815 TRBV7-1A0A0A6YYK4 115 aa9.18□□□□□ -0.94
CUX1-210ENST00000497815 OR2T8A6NH00 312 aa9.18□□□□□ -0.94
CUX1-210ENST00000497815 LY86O95711 162 aa9.18□□□□□ -0.94
CUX1-210ENST00000497815 HSPB1P04792 205 aaKnown RBP9.18□□□□□ -0.94
CUX1-210ENST00000497815 CLEC3BP05452 202 aa9.18□□□□□ -0.94
CUX1-210ENST00000497815 CAV2P51636 162 aa9.18□□□□□ -0.94
CUX1-210ENST00000497815 RUNX1Q01196 453 aa9.18□□□□□ -0.94
CUX1-210ENST00000497815 ZNF616Q08AN1 781 aa9.18□□□□□ -0.94
CUX1-210ENST00000497815 ACSM6Q6P461 480 aa9.18□□□□□ -0.94
CUX1-210ENST00000497815 ETV3LQ6ZN32 361 aa9.18□□□□□ -0.94
CUX1-210ENST00000497815 ZNF502Q8TBZ5 544 aa9.18□□□□□ -0.94
CUX1-210ENST00000497815 RNASEH2CQ8TDP1 164 aaKnown RBP9.18□□□□□ -0.94
CUX1-210ENST00000497815 PPP1R1CQ8WVI7 109 aa9.18□□□□□ -0.94
CUX1-210ENST00000497815 FNDC4Q9H6D8 234 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms