RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 BIVMQ86UB2 503 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 ARL17AQ8IVW1 177 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 NPCDR1Q9BY65 106 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 GVINP1Q7Z2Y8 2422 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 GREB1LQ9C091 1923 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-215ENST00000496447 A0A1B0GTI1 187 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 TNFRSF18Q9Y5U5 241 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 TRBV20OR9-2A0A075B6H5 130 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 MYOD1P15172 320 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 CA7P43166 264 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 CIRBPQ14011 172 aaKnown RBP11□□□□□ -0.65
PTPRF-215ENST00000496447 SPCS1Q9Y6A9 102 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 PSMB11A5LHX3 300 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 TMEM101Q96IK0 257 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 KCNS1Q96KK3 526 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 SDF2L1Q9HCN8 221 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 PIKFYVEQ9Y2I7 2098 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 C19orf67A6NJJ6 358 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 A6NNC1 897 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 RBFOX2O43251 390 aaKnown RBP eCLIP11□□□□□ -0.658e-7■□□□□ 9.9
PTPRF-215ENST00000496447 PAPPA-AS1Q5QFB9 102 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 DMRTA2Q96SC8 542 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 TRAV40A0A0B4J280 105 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 M0R381 172 aa11□□□□□ -0.65
PTPRF-215ENST00000496447 SAA1P0DJI8 122 aaPredicted RBP11□□□□□ -0.65
PTPRF-215ENST00000496447 PTPRFP10586 1907 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 TRAV24A0A0B4J272 114 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 PRSS2P07478 247 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 C8orf46Q8TAG6 207 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 PLSCR2Q9NRY7 297 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 SIPA1L1O43166 1804 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 TCRBV4S1A1TA0A5B7 111 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 IL18BPO95998 194 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 CENPWQ5EE01 88 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 RNASEH2CQ8TDP1 164 aaKnown RBP10.99□□□□□ -0.65
PTPRF-215ENST00000496447 CD24P25063 80 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 PYY3Q5JQD4 70 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 C1orf194Q5T5A4 169 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 FAM169BQ8N8A8 192 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 OR5A1Q8NGJ0 315 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 MEGF9Q9H1U4 602 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 TNFSF13O75888 250 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 SUMO2P61956 95 aaKnown RBP10.99□□□□□ -0.65
PTPRF-215ENST00000496447 COPS9Q8WXC6 57 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 PRDM13Q9H4Q3 707 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 RNASE1P07998 156 aaKnown RBP10.99□□□□□ -0.65
PTPRF-215ENST00000496447 UCP1P25874 307 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 HIST1H4GQ99525 98 aa10.99□□□□□ -0.65
PTPRF-215ENST00000496447 IGHV1-46P01743 117 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 CBLN1P23435 193 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 RIPPLY3P57055 190 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 NSUN5P1Q3KNT7 163 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 OR10AG1Q8NH19 301 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 YPEL1O60688 119 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 CD5P06127 495 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 YPEL2Q96QA6 119 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 TRPM7Q96QT4 1865 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 ANKRD36A6QL64 1941 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 TRGV2A0A075B6R0 118 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 OR52E5Q8NH55 327 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 RNASE4P34096 147 aaKnown RBP10.98□□□□□ -0.65
PTPRF-215ENST00000496447 EFNA4P52798 201 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 STHQ8IWL8 128 aa10.98□□□□□ -0.65
PTPRF-215ENST00000496447 CACNA1GO43497 2377 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 TFF1P04155 84 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 TFF3Q07654 80 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 C11orf44Q8N8P7 122 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 RPRMQ9NS64 109 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 OTX1P32242 354 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-215ENST00000496447 OR4D5Q8NGN0 318 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 CACNG8Q8WXS5 425 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 ZNF672Q499Z4 452 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-215ENST00000496447 C20orf204Q6ZNR8 217 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 CGAP01215 116 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 C5orf30Q96GV9 206 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 PLSCR4Q9NRQ2 329 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 IL36BQ9NZH7 164 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 UPK2O00526 184 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 WNT2P09544 360 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 PSMG4Q5JS54 123 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 TMEM242Q9NWH2 141 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 A0A0G2JMZ2 1700 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 LRRC37A2A6NM11 1700 aa10.97□□□□□ -0.65
PTPRF-215ENST00000496447 RALGAPA2Q2PPJ7 1873 aa10.96□□□□□ -0.65
PTPRF-215ENST00000496447 CA1P00915 261 aaPredicted RBP10.96□□□□□ -0.65
PTPRF-215ENST00000496447 AMBPP02760 352 aa10.96□□□□□ -0.65
PTPRF-215ENST00000496447 LYZL4Q96KX0 146 aa10.96□□□□□ -0.65
PTPRF-215ENST00000496447 TRBV6-7A0A0A0MS04 114 aa10.96□□□□□ -0.65
PTPRF-215ENST00000496447 EGR1P18146 543 aa10.96□□□□□ -0.65
PTPRF-215ENST00000496447 KIAA1644Q3SXP7 199 aa10.96□□□□□ -0.65
PTPRF-215ENST00000496447 MORN2Q502X0 79 aa10.96□□□□□ -0.65
PTPRF-215ENST00000496447 HBBP68871 147 aa10.96□□□□□ -0.66
PTPRF-215ENST00000496447 C7orf71A4D174 169 aa10.96□□□□□ -0.66
PTPRF-215ENST00000496447 TIMM23O14925 209 aa10.96□□□□□ -0.66
PTPRF-215ENST00000496447 ORAOV1Q8WV07 137 aa10.96□□□□□ -0.66
PTPRF-215ENST00000496447 A0A1B0GWB2 263 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 IGFBP3P17936 291 aaPredicted RBP10.95□□□□□ -0.66
PTPRF-215ENST00000496447 RHOGP84095 191 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 ZNF497Q6ZNH5 498 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 ZNF236Q9UL36 1845 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms