RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 LYZL2Q7Z4W2 148 aa12.15□□□□□ -0.46
LIME1-209ENST00000494776 OR52E5Q8NH55 327 aa12.15□□□□□ -0.46
LIME1-209ENST00000494776 CACFD1Q9UGQ2 172 aa12.15□□□□□ -0.46
LIME1-209ENST00000494776 SHPKQ9UHJ6 478 aa12.15□□□□□ -0.46
LIME1-209ENST00000494776 INS-IGF2F8WCM5 200 aa12.14□□□□□ -0.47
LIME1-209ENST00000494776 K7EIM0 57 aa12.14□□□□□ -0.47
LIME1-209ENST00000494776 LGALS9O00182 355 aa12.14□□□□□ -0.47
LIME1-209ENST00000494776 NDUFB6O95139 128 aa12.14□□□□□ -0.47
LIME1-209ENST00000494776 NXPH3O95157 252 aa12.14□□□□□ -0.47
LIME1-209ENST00000494776 IGLV1-51P01701 117 aa12.14□□□□□ -0.47
LIME1-209ENST00000494776 GP9P14770 177 aa12.14□□□□□ -0.47
LIME1-209ENST00000494776 IL34Q6ZMJ4 242 aa12.14□□□□□ -0.47
LIME1-209ENST00000494776 DYNLRB2Q8TF09 96 aa12.14□□□□□ -0.47
LIME1-209ENST00000494776 S100ZQ8WXG8 99 aa12.14□□□□□ -0.47
LIME1-209ENST00000494776 BSCL2Q96G97 398 aaPredicted RBP12.14□□□□□ -0.47
LIME1-209ENST00000494776 HEYLQ9NQ87 328 aaPredicted RBP12.14□□□□□ -0.47
LIME1-209ENST00000494776 GAR1Q9NY12 217 aaKnown RBP12.14□□□□□ -0.47
LIME1-209ENST00000494776 SIGLEC8Q9NYZ4 499 aa12.14□□□□□ -0.47
LIME1-209ENST00000494776 IGHV3-35A0A0C4DH35 117 aa12.13□□□□□ -0.47
LIME1-209ENST00000494776 SFT2D2O95562 160 aa12.13□□□□□ -0.47
LIME1-209ENST00000494776 MT-CO2P00403 227 aa12.13□□□□□ -0.47
LIME1-209ENST00000494776 MFAP4P55083 255 aa12.13□□□□□ -0.47
LIME1-209ENST00000494776 PPP1R1AQ13522 171 aa12.13□□□□□ -0.47
LIME1-209ENST00000494776 SMCO1Q147U7 214 aa12.13□□□□□ -0.47
LIME1-209ENST00000494776 SPSB3Q6PJ21 355 aa12.13□□□□□ -0.47
LIME1-209ENST00000494776 LINC00299Q6ZSB3 139 aa12.13□□□□□ -0.47
LIME1-209ENST00000494776 ATP6V0BQ99437 205 aa12.13□□□□□ -0.47
LIME1-209ENST00000494776 PALMDQ9NP74 551 aa12.13□□□□□ -0.47
LIME1-209ENST00000494776 DUXBA0A1W2PPF3 345 aa12.12□□□□□ -0.47
LIME1-209ENST00000494776 C2orf70A6NJV1 201 aa12.12□□□□□ -0.47
LIME1-209ENST00000494776 I3L2K1 104 aa12.12□□□□□ -0.47
LIME1-209ENST00000494776 CORTO00230 105 aa12.12□□□□□ -0.47
LIME1-209ENST00000494776 IGHV3-48P01763 117 aa12.12□□□□□ -0.47
LIME1-209ENST00000494776 UBE2MP61081 183 aaKnown RBP12.12□□□□□ -0.47
LIME1-209ENST00000494776 AARDQ4LEZ3 155 aa12.12□□□□□ -0.47
LIME1-209ENST00000494776 LCN12Q6JVE5 192 aa12.12□□□□□ -0.47
LIME1-209ENST00000494776 OR1S1Q8NH92 325 aa12.12□□□□□ -0.47
LIME1-209ENST00000494776 CCDC32Q9BV29 185 aa12.12□□□□□ -0.47
LIME1-209ENST00000494776 HIPK2Q9H2X6 1198 aa12.12□□□□□ -0.47
LIME1-209ENST00000494776 BATF3Q9NR55 127 aa12.12□□□□□ -0.47
LIME1-209ENST00000494776 FLVCR2Q9UPI3 526 aa12.12□□□□□ -0.47
LIME1-209ENST00000494776 NUPL2O15504 423 aaKnown RBP12.11□□□□□ -0.47
LIME1-209ENST00000494776 LYRM1O43325 122 aa12.11□□□□□ -0.47
LIME1-209ENST00000494776 GNG7O60262 68 aa12.11□□□□□ -0.47
LIME1-209ENST00000494776 RNASE2P10153 161 aaKnown RBP12.11□□□□□ -0.47
LIME1-209ENST00000494776 FOLR2P14207 255 aa12.11□□□□□ -0.47
LIME1-209ENST00000494776 HTR2BP41595 481 aa12.11□□□□□ -0.47
LIME1-209ENST00000494776 ANKRD55Q3KP44 614 aa12.11□□□□□ -0.47
LIME1-209ENST00000494776 NMSQ5H8A3 153 aa12.11□□□□□ -0.47
LIME1-209ENST00000494776 DUSP18Q8NEJ0 188 aa12.11□□□□□ -0.47
LIME1-209ENST00000494776 TXN2Q99757 166 aa12.11□□□□□ -0.47
LIME1-209ENST00000494776 PTTG2Q9NZH5 202 aa12.11□□□□□ -0.47
LIME1-209ENST00000494776 UFC1Q9Y3C8 167 aa12.11□□□□□ -0.47
LIME1-209ENST00000494776 A0A1B0GU03 582 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 CBLN1P23435 193 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 BTCP35070 178 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 OPRK1P41145 380 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 RELQ04864 619 aaPredicted RBP12.1□□□□□ -0.47
LIME1-209ENST00000494776 TNFRSF9Q07011 255 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 CD69Q07108 199 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 C4orf46Q504U0 113 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 TM4SF20Q53R12 229 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 UNQ9165/PRO28630Q6UXU0 137 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 LRTM2Q8N967 370 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 OR2K2Q8NGT1 345 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 CHRDL1Q9BU40 450 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 C20orf24Q9BUV8 137 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 ZNF436Q9C0F3 470 aaPredicted RBP12.1□□□□□ -0.47
LIME1-209ENST00000494776 SMAD5-AS1Q9Y6J3 95 aa12.1□□□□□ -0.47
LIME1-209ENST00000494776 C9orf170A2RU37 121 aa12.09□□□□□ -0.47
LIME1-209ENST00000494776 A8MWP6 167 aa12.09□□□□□ -0.47
LIME1-209ENST00000494776 F8W735 103 aaPredicted RBP12.09□□□□□ -0.47
LIME1-209ENST00000494776 NDUFA4O00483 81 aa12.09□□□□□ -0.47
LIME1-209ENST00000494776 PLA2G10O15496 165 aa12.09□□□□□ -0.47
LIME1-209ENST00000494776 HOXB5P09067 269 aa12.09□□□□□ -0.47
LIME1-209ENST00000494776 ANXA7P20073 488 aaKnown RBP12.09□□□□□ -0.47
LIME1-209ENST00000494776 NPBWR1P48145 328 aa12.09□□□□□ -0.47
LIME1-209ENST00000494776 ADAMTSL5Q6ZMM2 481 aa12.09□□□□□ -0.47
LIME1-209ENST00000494776 SLC24A4Q8NFF2 622 aa12.09□□□□□ -0.47
LIME1-209ENST00000494776 COQ8AQ8NI60 647 aa12.09□□□□□ -0.47
LIME1-209ENST00000494776 CACNG8Q8WXS5 425 aa12.09□□□□□ -0.47
LIME1-209ENST00000494776 TECRQ9NZ01 308 aaKnown RBP12.09□□□□□ -0.47
LIME1-209ENST00000494776 TMED3Q9Y3Q3 217 aa12.09□□□□□ -0.47
LIME1-209ENST00000494776 LSM4Q9Y4Z0 139 aaKnown RBP12.09□□□□□ -0.47
LIME1-209ENST00000494776 RPS10-NUDT3A0A1W2PQS6 291 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 TMEM213A2RRL7 107 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 YIF1AO95070 293 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 IFNA10P01566 189 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 CTSGP08311 255 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 OR4E1P0C645 316 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 EDN2P20800 178 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 FCGR2BP31994 310 aaPredicted RBP12.08□□□□□ -0.48
LIME1-209ENST00000494776 ADMP35318 185 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 ZNF846Q147U1 533 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 DEFB114Q30KQ6 69 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 CD300EQ496F6 205 aaPredicted RBP12.08□□□□□ -0.48
LIME1-209ENST00000494776 GTSCR1Q86UQ5 136 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 NOXA1Q86UR1 476 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 UXS1Q8NBZ7 420 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 DTD1Q8TEA8 209 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms