RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 TMEM14BQ9NUH8 114 aa8.58□□□□□ -1.04
COL6A3-213ENST00000493475 A0A1W2PS18 150 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 K7EIM0 57 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 ZNF207O43670 478 aaKnown RBP8.57□□□□□ -1.04
COL6A3-213ENST00000493475 DFFBO76075 338 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 ATP6V1G2O95670 118 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 TFPI2P48307 235 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 RPL11P62913 178 aaKnown RBP8.57□□□□□ -1.04
COL6A3-213ENST00000493475 KCTD21Q4G0X4 260 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 TMEM41BQ5BJD5 291 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 C11orf45Q8TAV5 145 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 PINX1Q96BK5 328 aaKnown RBP8.57□□□□□ -1.04
COL6A3-213ENST00000493475 OR10C1Q96KK4 312 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 CHRDL1Q9BU40 450 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 SCPEP1Q9HB40 452 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 ENY2Q9NPA8 101 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 NSG2Q9Y328 171 aa8.57□□□□□ -1.04
COL6A3-213ENST00000493475 CHEK1O14757 476 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 ST8SIA3O43173 380 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 MT-CO2P00403 227 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 CTSGP08311 255 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 NAT1P18440 290 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 HLA-DMAP28067 261 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 RCVRNP35243 200 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 HRH1P35367 487 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 PRCDQ00LT1 54 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 TMEM187Q14656 261 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 PHLDA2Q53GA4 152 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 LGALS9CQ6DKI2 356 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 SLC35G3Q8N808 338 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 ZNF114Q8NC26 417 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 RNF2Q99496 336 aa8.56□□□□□ -1.04
COL6A3-213ENST00000493475 NXF2Q9GZY0 626 aaKnown RBP8.56□□□□□ -1.04
COL6A3-213ENST00000493475 C11orf68Q9H3H3 251 aaKnown RBP8.56□□□□□ -1.04
COL6A3-213ENST00000493475 IGKV3-7A0A075B6H7 116 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 IGHV3OR16-8A0A075B7F1 116 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 TRAV2A0A0B4J234 112 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 CA1P00915 261 aaPredicted RBP8.55□□□□□ -1.04
COL6A3-213ENST00000493475 AKR1C2P52895 323 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 HSPE1P61604 102 aaKnown RBP8.55□□□□□ -1.04
COL6A3-213ENST00000493475 TCF24Q7RTU0 167 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 TBC1D26Q86UD7 250 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 APRG1Q8IVJ8 170 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 STHQ8IWL8 128 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 OR11H2Q8NH07 326 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 RNASE11Q8TAA1 199 aaKnown RBP8.55□□□□□ -1.04
COL6A3-213ENST00000493475 C2CD4CQ8TF44 421 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 ZNF486Q96H40 463 aaPredicted RBP8.55□□□□□ -1.04
COL6A3-213ENST00000493475 GRAMD2BQ96HH9 432 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 FXYD6Q9H0Q3 95 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 RNF167Q9H6Y7 350 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 FBXL17Q9UF56 701 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 ANAPC10Q9UM13 185 aa8.55□□□□□ -1.04
COL6A3-213ENST00000493475 C11orf94C9JXX5 98 aa8.54□□□□□ -1.04
COL6A3-213ENST00000493475 IFNA17P01571 189 aa8.54□□□□□ -1.04
COL6A3-213ENST00000493475 APOA1P02647 267 aa8.54□□□□□ -1.04
COL6A3-213ENST00000493475 PGAM2P15259 253 aa8.54□□□□□ -1.04
COL6A3-213ENST00000493475 MFAP2P55001 183 aa8.54□□□□□ -1.04
COL6A3-213ENST00000493475 UCP3P55916 312 aa8.54□□□□□ -1.04
COL6A3-213ENST00000493475 ZNF600Q6ZNG1 722 aa8.54□□□□□ -1.04
COL6A3-213ENST00000493475 C15orf40Q8WUR7 153 aa8.54□□□□□ -1.04
COL6A3-213ENST00000493475 KRTAP4-12Q9BQ66 201 aa8.54□□□□□ -1.04
COL6A3-213ENST00000493475 A0A087WXM4 84 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 F8W735 103 aaPredicted RBP8.53□□□□□ -1.04
COL6A3-213ENST00000493475 I3L2K1 104 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 B3GALNT1O75752 331 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 NPPCP23582 126 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 HOXA1P49639 335 aaPredicted RBP8.53□□□□□ -1.04
COL6A3-213ENST00000493475 MZT2AQ6P582 158 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 MORN3Q6PF18 240 aaPredicted RBP8.53□□□□□ -1.04
COL6A3-213ENST00000493475 GBGT1Q8N5D6 347 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 CCDC71LQ8N9Z2 235 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 AP3S1Q92572 193 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 MRGPRFQ96AM1 343 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 RRNAD1Q96FB5 475 aaKnown RBP8.53□□□□□ -1.04
COL6A3-213ENST00000493475 SEC22AQ96IW7 307 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 METTL26Q96S19 204 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 COMMD3Q9UBI1 195 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 RABAC1Q9UI14 185 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 ALMS1Q8TCU4 4167 aa8.53□□□□□ -1.04
COL6A3-213ENST00000493475 TRAV30A0A087WSZ9 112 aa8.52□□□□□ -1.05
COL6A3-213ENST00000493475 IGHV3-49A0A0A0MS15 119 aa8.52□□□□□ -1.05
COL6A3-213ENST00000493475 RPS10-NUDT3A0A1W2PQS6 291 aa8.52□□□□□ -1.05
COL6A3-213ENST00000493475 SPP1P10451 314 aa8.52□□□□□ -1.05
COL6A3-213ENST00000493475 TBPP20226 339 aa8.52□□□□□ -1.05
COL6A3-213ENST00000493475 RPS19P39019 145 aaKnown RBP8.52□□□□□ -1.05
COL6A3-213ENST00000493475 TRIM16LQ309B1 348 aa8.52□□□□□ -1.05
COL6A3-213ENST00000493475 RNASE10Q5GAN6 216 aaKnown RBP8.52□□□□□ -1.05
COL6A3-213ENST00000493475 SNX29P2Q8IUI4 249 aa8.52□□□□□ -1.05
COL6A3-213ENST00000493475 ARRDC1Q8N5I2 433 aa8.52□□□□□ -1.05
COL6A3-213ENST00000493475 GPX8Q8TED1 209 aa8.52□□□□□ -1.05
COL6A3-213ENST00000493475 MS4A6AQ9H2W1 248 aa8.52□□□□□ -1.05
COL6A3-213ENST00000493475 CACFD1Q9UGQ2 172 aa8.52□□□□□ -1.05
COL6A3-213ENST00000493475 PUS1Q9Y606 427 aaKnown RBP eCLIP8.52□□□□□ -1.05
COL6A3-213ENST00000493475 IGHV3OR16-13A0A075B7E8 117 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 IGHV3-74A0A0B4J1X5 117 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 TNFAIP8O95379 198 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 OPRK1P41145 380 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 AP2S1P53680 142 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-213ENST00000493475 DEFB131AP59861 70 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms