RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 CEBPZOSA8MTT3 80 aa12.44□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 UPK1BO75841 260 aa12.44□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 NXPH3O95157 252 aa12.44□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 CLEC3BP05452 202 aa12.44□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 ANXA7P20073 488 aaKnown RBP12.44□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 SUB1P53999 127 aaKnown RBP eCLIP12.44□□□□□ -0.422e-7■■□□□ 14.2
MSH5-SAPCD1-206ENST00000491552 SCARB1Q8WTV0 552 aa12.44□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 PEMTQ9UBM1 199 aa12.44□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 NOTCH3Q9UM47 2321 aa12.44□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 I3L2K1 104 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 OR2C1O95371 312 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 TCRBP04435 133 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 RNASE2P10153 161 aaKnown RBP12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 DHRS2Q13268 280 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 C4orf46Q504U0 113 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 MZT2BQ6NZ67 158 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 LYG2Q86SG7 212 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 OR1S1Q8NH92 325 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 PINX1Q96BK5 328 aaKnown RBP12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 ATP6V0BQ99437 205 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 ZC4H2Q9NQZ6 224 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 TBC1D24Q9ULP9 559 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 TMED3Q9Y3Q3 217 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 NOTCH1P46531 2555 aa12.43□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 OR2T8A6NH00 312 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 TGOLN2O43493 480 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 MT-CO2P00403 227 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 SLC25A6P12236 298 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 TNFRSF9Q07011 255 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 ASAH1Q13510 395 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 BSXQ3C1V8 233 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 Q56UQ5 140 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 PVRIGQ6DKI7 326 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 PLET1Q6UQ28 207 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 GPHB5Q86YW7 130 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 UBAC2Q8NBM4 344 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 COQ8AQ8NI60 647 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 BSCL2Q96G97 398 aaPredicted RBP12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 HEYLQ9NQ87 328 aaPredicted RBP12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 HSPB7Q9UBY9 170 aa12.42□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 FAM240BA0A1B0GVZ2 78 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 F8W735 103 aaPredicted RBP12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 LGALS9O00182 355 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 CORTO00230 105 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 CSN3P07498 182 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 HOXB5P09067 269 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 HTR2BP41595 481 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 FAM106AQ4KMX7 169 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 GGNBP1Q5YKI7 109 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 SPSB3Q6PJ21 355 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 IL34Q6ZMJ4 242 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 MRAPQ8TCY5 172 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 HIPK2Q9H2X6 1198 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 NUDT15Q9NV35 164 aa12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 GAR1Q9NY12 217 aaKnown RBP12.41□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 TRAV6A0A075B6T7 132 aa12.4□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 WI2-2373I1.2A0A1W2PRP0 233 aa12.4□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 PITX3O75364 302 aa12.4□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 FCGR2BP31994 310 aaPredicted RBP12.4□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 MFAP4P55083 255 aa12.4□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 HAPLN4Q86UW8 402 aa12.4□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 SLC24A4Q8NFF2 622 aa12.4□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 DTD1Q8TEA8 209 aa12.4□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 TXN2Q99757 166 aa12.4□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 RBKSQ9H477 322 aa12.4□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 SIGLEC8Q9NYZ4 499 aa12.4□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 K7EIL1 84 aa12.39□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 IGLV1-51P01701 117 aa12.39□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 IGHV3-48P01763 117 aa12.39□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 IFITM3Q01628 133 aa12.39□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 C2orf83Q53S99 150 aa12.39□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 C11orf87Q6NUJ2 197 aa12.39□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 OR52B4Q8NGK2 314 aa12.39□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 PRR25Q96S07 402 aa12.39□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 ZNF436Q9C0F3 470 aaPredicted RBP12.39□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 ZNF256Q9Y2P7 627 aaPredicted RBP12.39□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 DNAH3Q8TD57 4116 aa12.39□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 IGHV3-35A0A0C4DH35 117 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 ZNF320A2RRD8 509 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 C2orf70A6NJV1 201 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 A8MWP6 167 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 FAM90A26D6RGX4 464 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 NUPL2O15504 423 aaKnown RBP12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 ADAP1O75689 374 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 LY86O95711 162 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 IFNA21P01568 189 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 H2AFB2P0C5Z0 115 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 SPNP16150 400 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 NPY1RP25929 384 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 OPRK1P41145 380 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 DUSP18Q8NEJ0 188 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 ENKURQ8TC29 256 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 MITD1Q8WV92 249 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 CHRDL1Q9BU40 450 aa12.38□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 RPS10-NUDT3A0A1W2PQS6 291 aa12.37□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 GNG7O60262 68 aa12.37□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 IFNA10P01566 189 aa12.37□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 ADMP35318 185 aa12.37□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 NPBWR1P48145 328 aa12.37□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 UNQ9165/PRO28630Q6UXU0 137 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms