RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 M0R2Z0 102 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 LATO43561 262 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 YPEL1O60688 119 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 EEDO75530 441 aaKnown RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 OR7C1O76099 320 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 PROSCO94903 275 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 UBL3O95164 117 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 NRASP01111 189 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 IGHV3-9P01782 118 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 IGHG3P01860 377 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 HBZP02008 142 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ORM1P02763 201 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 TTRP02766 147 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 CSN2P05814 226 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 CRYGBP07316 175 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 GIG44P09565 113 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SPINK8P0C7L1 97 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 AKAIN1P0CW23 69 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SMIM17P0DL12 118 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 IGLC2P0DOY2 106 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 IGLC3P0DOY3 106 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 HIST1H1EP10412 219 aaKnown RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ERGP11308 486 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SLC25A4P12235 298 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 CPMP14384 443 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ATF1P18846 271 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 CMPK1P30085 196 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 TSPOP30536 169 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 FGF9P31371 208 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 GABRA3P34903 492 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SAA4P35542 130 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 GUCA1AP43080 201 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 GPR1P46091 355 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 OR1D4P47884 311 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 CCL11P51671 97 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF121P58317 390 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 RHOBP62745 196 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 DYNLT1P63172 113 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ARG2P78540 354 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 PSG4Q00888 419 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 PTPRJQ12913 1337 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 CATR1Q13166 79 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF345Q14585 488 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 RGNQ15493 299 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 HIST3H3Q16695 136 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 IAH1Q2TAA2 248 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 LRRC75BQ2VPJ9 315 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SLC25A35Q3KQZ1 300 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SPATA45Q537H7 98 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 LRRC10Q5BKY1 277 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 UFSP1Q6NVU6 142 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 CD200R1LQ6Q8B3 271 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 DUX4L9Q6RFH8 374 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 DPPA3Q6W0C5 159 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 VPS13CQ709C8 3753 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 CMC1Q7Z7K0 106 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SCD5Q86SK9 330 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 CALHM3Q86XJ0 350 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 UMODL1-AS1Q8N2C9 162 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 C14orf178Q8N769 122 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF676Q8N7Q3 588 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 INO80EQ8NBZ0 244 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 OR4B1Q8NGF8 309 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 OR8B12Q8NGG6 310 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 OR4A5Q8NH83 315 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 OR13C6PQ8NH95 151 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 OR5K2Q8NHB8 316 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 LINC01006Q8NI28 216 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 BAALCQ8WXS3 180 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 OR5P2Q8WZ92 322 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 EMG1Q92979 244 aaKnown RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SLAMF6Q96DU3 332 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 MRPL53Q96EL3 112 aaKnown RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 IMP4Q96G21 291 aaKnown RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ACY3Q96HD9 319 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 DNAJC30Q96LL9 226 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 LINC00477Q96M19 166 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF681Q96N22 645 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 YPEL2Q96QA6 119 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ACCSQ96QU6 501 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 OR4K3Q96R72 315 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 KIR2DL4Q99706 377 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SLC25A21Q9BQT8 299 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SNRNP25Q9BV90 132 aaKnown RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 DUSP16Q9BY84 665 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 NMNAT2Q9BZQ4 307 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 OR11A1Q9GZK7 315 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 POLR2J2Q9GZM3 115 aaKnown RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 MAP1LC3BQ9GZQ8 125 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 EIF5A2Q9GZV4 153 aaKnown RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 GABARAPL1Q9H0R8 117 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 POLR2J3Q9H1A7 115 aaKnown RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SLC35B3Q9H1N7 401 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 TXNIPQ9H3M7 391 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 WDR76Q9H967 626 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ELOVL3Q9HB03 270 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 TAF9BQ9HBM6 251 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 HES4Q9HCC6 221 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 KCNJ16Q9NPI9 418 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 PKDREJQ9NTG1 2253 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms