RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 MT-CO2P00403 227 aa15.93■□□□□ 0.14
LIME1-207ENST00000489212 IFNA17P01571 189 aa15.93■□□□□ 0.14
LIME1-207ENST00000489212 IGHV3-48P01763 117 aa15.93■□□□□ 0.14
LIME1-207ENST00000489212 CD7P09564 240 aa15.93■□□□□ 0.14
LIME1-207ENST00000489212 ETV6P41212 452 aa15.93■□□□□ 0.14
LIME1-207ENST00000489212 CD81P60033 236 aa15.93■□□□□ 0.14
LIME1-207ENST00000489212 Q56UQ5 140 aa15.93■□□□□ 0.14
LIME1-207ENST00000489212 SPSB3Q6PJ21 355 aa15.93■□□□□ 0.14
LIME1-207ENST00000489212 CCDC190Q86UF4 302 aa15.93■□□□□ 0.14
LIME1-207ENST00000489212 TMEM61Q8N0U2 210 aa15.93■□□□□ 0.14
LIME1-207ENST00000489212 SLC35G3Q8N808 338 aa15.93■□□□□ 0.14
LIME1-207ENST00000489212 RBPMSQ93062 196 aaKnown RBP15.93■□□□□ 0.14
LIME1-207ENST00000489212 PALMDQ9NP74 551 aa15.93■□□□□ 0.14
LIME1-207ENST00000489212 CTSGP08311 255 aa15.92■□□□□ 0.14
LIME1-207ENST00000489212 ELLP55199 621 aaPredicted RBP15.92■□□□□ 0.14
LIME1-207ENST00000489212 DHODHQ02127 395 aa15.92■□□□□ 0.14
LIME1-207ENST00000489212 GUCA2BQ16661 112 aa15.92■□□□□ 0.14
LIME1-207ENST00000489212 ZNF57Q68EA5 555 aaPredicted RBP15.92■□□□□ 0.14
LIME1-207ENST00000489212 BTNL8Q6UX41 500 aa15.92■□□□□ 0.14
LIME1-207ENST00000489212 RNASE11Q8TAA1 199 aaKnown RBP15.92■□□□□ 0.14
LIME1-207ENST00000489212 NEURL2Q9BR09 285 aa15.92■□□□□ 0.14
LIME1-207ENST00000489212 PRR13Q9NZ81 148 aa15.92■□□□□ 0.14
LIME1-207ENST00000489212 UFC1Q9Y3C8 167 aa15.92■□□□□ 0.14
LIME1-207ENST00000489212 NBEAL2Q6ZNJ1 2754 aa15.91■□□□□ 0.14
LIME1-207ENST00000489212 S100A5P33763 92 aa15.91■□□□□ 0.14
LIME1-207ENST00000489212 TMEM187Q14656 261 aa15.91■□□□□ 0.14
LIME1-207ENST00000489212 AARDQ4LEZ3 155 aa15.91■□□□□ 0.14
LIME1-207ENST00000489212 TMEM268Q5VZI3 342 aa15.91■□□□□ 0.14
LIME1-207ENST00000489212 FAM219AQ8IW50 185 aa15.91■□□□□ 0.14
LIME1-207ENST00000489212 PINX1Q96BK5 328 aaKnown RBP15.91■□□□□ 0.14
LIME1-207ENST00000489212 GPR146Q96CH1 333 aa15.91■□□□□ 0.14
LIME1-207ENST00000489212 MRPL27Q9P0M9 148 aaKnown RBP15.91■□□□□ 0.14
LIME1-207ENST00000489212 TMEM56-RWDD3S4R434 201 aa15.91■□□□□ 0.14
LIME1-207ENST00000489212 KMT2CQ8NEZ4 4911 aaKnown RBP15.9■□□□□ 0.14
LIME1-207ENST00000489212 IGHV3OR16-8A0A075B7F1 116 aa15.9■□□□□ 0.14
LIME1-207ENST00000489212 NDUFA4O00483 81 aa15.9■□□□□ 0.14
LIME1-207ENST00000489212 RNASE2P10153 161 aaKnown RBP15.9■□□□□ 0.14
LIME1-207ENST00000489212 FCGR2BP31994 310 aaPredicted RBP15.9■□□□□ 0.14
LIME1-207ENST00000489212 MFAP4P55083 255 aa15.9■□□□□ 0.14
LIME1-207ENST00000489212 PVRIGQ6DKI7 326 aa15.9■□□□□ 0.14
LIME1-207ENST00000489212 MARC2Q969Z3 335 aa15.9■□□□□ 0.14
LIME1-207ENST00000489212 GALNT14Q96FL9 552 aa15.9■□□□□ 0.14
LIME1-207ENST00000489212 RCHY1Q96PM5 261 aa15.9■□□□□ 0.14
LIME1-207ENST00000489212 TM2D3Q9BRN9 247 aa15.9■□□□□ 0.14
LIME1-207ENST00000489212 PDCD10Q9BUL8 212 aa15.9■□□□□ 0.14
LIME1-207ENST00000489212 WFDC10AQ9H1F0 79 aa15.9■□□□□ 0.14
LIME1-207ENST00000489212 SNCAP37840 140 aa15.89■□□□□ 0.13
LIME1-207ENST00000489212 HOXA1P49639 335 aaPredicted RBP15.89■□□□□ 0.13
LIME1-207ENST00000489212 SUPT4H1P63272 117 aaKnown RBP15.89■□□□□ 0.13
LIME1-207ENST00000489212 TOMM5Q8N4H5 51 aa15.89■□□□□ 0.13
LIME1-207ENST00000489212 SCGB3A2Q96PL1 93 aa15.89■□□□□ 0.13
LIME1-207ENST00000489212 TUBA4BQ9H853 241 aa15.89■□□□□ 0.13
LIME1-207ENST00000489212 CACNG5Q9UF02 275 aa15.89■□□□□ 0.13
LIME1-207ENST00000489212 ZNF207O43670 478 aaKnown RBP15.88■□□□□ 0.13
LIME1-207ENST00000489212 SCAF4O95104 1147 aaKnown RBP15.88■□□□□ 0.13
LIME1-207ENST00000489212 AKR1C4P17516 323 aa15.88■□□□□ 0.13
LIME1-207ENST00000489212 SPCS3P61009 180 aa15.88■□□□□ 0.13
LIME1-207ENST00000489212 DEFB125Q8N687 156 aa15.88■□□□□ 0.13
LIME1-207ENST00000489212 TXN2Q99757 166 aa15.88■□□□□ 0.13
LIME1-207ENST00000489212 C20orf24Q9BUV8 137 aa15.88■□□□□ 0.13
LIME1-207ENST00000489212 DAZ1Q9NQZ3 744 aaKnown RBP15.88■□□□□ 0.13
LIME1-207ENST00000489212 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.88■□□□□ 0.13
LIME1-207ENST00000489212 NUPL2O15504 423 aaKnown RBP15.87■□□□□ 0.13
LIME1-207ENST00000489212 FAUP35544 74 aaKnown RBP15.87■□□□□ 0.13
LIME1-207ENST00000489212 AP3S2P59780 193 aa15.87■□□□□ 0.13
LIME1-207ENST00000489212 HAGHQ16775 308 aa15.87■□□□□ 0.13
LIME1-207ENST00000489212 OR52E5Q8NH55 327 aa15.87■□□□□ 0.13
LIME1-207ENST00000489212 IL22RA2Q969J5 263 aa15.87■□□□□ 0.13
LIME1-207ENST00000489212 ZMAT4Q9H898 229 aa15.87■□□□□ 0.13
LIME1-207ENST00000489212 ENY2Q9NPA8 101 aa15.87■□□□□ 0.13
LIME1-207ENST00000489212 GAR1Q9NY12 217 aaKnown RBP15.87■□□□□ 0.13
LIME1-207ENST00000489212 KCNIP3Q9Y2W7 256 aa15.87■□□□□ 0.13
LIME1-207ENST00000489212 BSXQ3C1V8 233 aa15.86■□□□□ 0.13
LIME1-207ENST00000489212 LINC00322Q6ZN03 302 aaPredicted RBP15.86■□□□□ 0.13
LIME1-207ENST00000489212 SRRQ9GZT4 340 aa15.86■□□□□ 0.13
LIME1-207ENST00000489212 TRAV25A0A0B4J276 109 aa15.85■□□□□ 0.13
LIME1-207ENST00000489212 OR11H12B2RN74 326 aa15.85■□□□□ 0.13
LIME1-207ENST00000489212 K7EMT4 169 aa15.85■□□□□ 0.13
LIME1-207ENST00000489212 RELQ04864 619 aaPredicted RBP15.85■□□□□ 0.13
LIME1-207ENST00000489212 FNDC4Q9H6D8 234 aaPredicted RBP15.85■□□□□ 0.13
LIME1-207ENST00000489212 MRPL36Q9P0J6 103 aaKnown RBP15.85■□□□□ 0.13
LIME1-207ENST00000489212 RBMY1BA6NDE4 496 aaKnown RBP15.84■□□□□ 0.13
LIME1-207ENST00000489212 RBMY1EA6NEQ0 496 aaKnown RBP15.84■□□□□ 0.13
LIME1-207ENST00000489212 C15orf62A8K5M9 175 aa15.84■□□□□ 0.13
LIME1-207ENST00000489212 GNG7O60262 68 aa15.84■□□□□ 0.13
LIME1-207ENST00000489212 RBMY1DP0C7P1 496 aaKnown RBP15.84■□□□□ 0.13
LIME1-207ENST00000489212 SUB1P53999 127 aaKnown RBP eCLIP15.84■□□□□ 0.13
LIME1-207ENST00000489212 MLANAQ16655 118 aa15.84■□□□□ 0.13
LIME1-207ENST00000489212 SPANXN2Q5MJ10 180 aa15.84■□□□□ 0.13
LIME1-207ENST00000489212 RBPMS2Q6ZRY4 209 aaKnown RBP15.84■□□□□ 0.13
LIME1-207ENST00000489212 LYZL2Q7Z4W2 148 aa15.84■□□□□ 0.13
LIME1-207ENST00000489212 OR52B4Q8NGK2 314 aa15.84■□□□□ 0.13
LIME1-207ENST00000489212 SRD5A3Q9H8P0 318 aa15.84■□□□□ 0.13
LIME1-207ENST00000489212 NXPH3O95157 252 aa15.83■□□□□ 0.12
LIME1-207ENST00000489212 NPBWR1P48145 328 aa15.83■□□□□ 0.12
LIME1-207ENST00000489212 NMSQ5H8A3 153 aa15.83■□□□□ 0.12
LIME1-207ENST00000489212 SLC16A13Q7RTY0 426 aa15.83■□□□□ 0.12
LIME1-207ENST00000489212 TMED4Q7Z7H5 227 aa15.83■□□□□ 0.12
LIME1-207ENST00000489212 DUSP18Q8NEJ0 188 aa15.83■□□□□ 0.12
LIME1-207ENST00000489212 OR10C1Q96KK4 312 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms