RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 K7EIM0 57 aa11.26□□□□□ -0.61
USP4-212ENST00000486549 PLA2G10O15496 165 aa11.26□□□□□ -0.61
USP4-212ENST00000486549 LYRM1O43325 122 aa11.26□□□□□ -0.61
USP4-212ENST00000486549 SPCS3P61009 180 aa11.26□□□□□ -0.61
USP4-212ENST00000486549 Q56UQ5 140 aa11.26□□□□□ -0.61
USP4-212ENST00000486549 NMSQ5H8A3 153 aa11.26□□□□□ -0.61
USP4-212ENST00000486549 PLET1Q6UQ28 207 aa11.26□□□□□ -0.61
USP4-212ENST00000486549 SCARB1Q8WTV0 552 aa11.26□□□□□ -0.61
USP4-212ENST00000486549 PEMTQ9UBM1 199 aa11.26□□□□□ -0.61
USP4-212ENST00000486549 ZNF256Q9Y2P7 627 aaPredicted RBP11.26□□□□□ -0.61
USP4-212ENST00000486549 IGHV3-35A0A0C4DH35 117 aa11.25□□□□□ -0.61
USP4-212ENST00000486549 TGOLN2O43493 480 aa11.25□□□□□ -0.61
USP4-212ENST00000486549 MT-CO2P00403 227 aa11.25□□□□□ -0.61
USP4-212ENST00000486549 IGHV3-48P01763 117 aa11.25□□□□□ -0.61
USP4-212ENST00000486549 ANXA7P20073 488 aaKnown RBP11.25□□□□□ -0.61
USP4-212ENST00000486549 SMCO1Q147U7 214 aa11.25□□□□□ -0.61
USP4-212ENST00000486549 AARDQ4LEZ3 155 aa11.25□□□□□ -0.61
USP4-212ENST00000486549 DEFB121Q5J5C9 76 aa11.25□□□□□ -0.61
USP4-212ENST00000486549 IL34Q6ZMJ4 242 aa11.25□□□□□ -0.61
USP4-212ENST00000486549 OR52E5Q8NH55 327 aa11.25□□□□□ -0.61
USP4-212ENST00000486549 OR1S1Q8NH92 325 aa11.25□□□□□ -0.61
USP4-212ENST00000486549 HEYLQ9NQ87 328 aaPredicted RBP11.25□□□□□ -0.61
USP4-212ENST00000486549 PIGBOS1A0A0B4J2F0 54 aa11.24□□□□□ -0.61
USP4-212ENST00000486549 DUXBA0A1W2PPF3 345 aa11.24□□□□□ -0.61
USP4-212ENST00000486549 ZNF320A2RRD8 509 aa11.24□□□□□ -0.61
USP4-212ENST00000486549 INS-IGF2F8WCM5 200 aa11.24□□□□□ -0.61
USP4-212ENST00000486549 I3L2K1 104 aa11.24□□□□□ -0.61
USP4-212ENST00000486549 CSN3P07498 182 aa11.24□□□□□ -0.61
USP4-212ENST00000486549 RNASE2P10153 161 aaKnown RBP11.24□□□□□ -0.61
USP4-212ENST00000486549 SPNP16150 400 aa11.24□□□□□ -0.61
USP4-212ENST00000486549 EDN2P20800 178 aa11.24□□□□□ -0.61
USP4-212ENST00000486549 SUB1P53999 127 aaKnown RBP eCLIP11.24□□□□□ -0.61
USP4-212ENST00000486549 UBE2MP61081 183 aaKnown RBP11.24□□□□□ -0.61
USP4-212ENST00000486549 C11orf87Q6NUJ2 197 aa11.24□□□□□ -0.61
USP4-212ENST00000486549 WDR12Q9GZL7 423 aaKnown RBP11.24□□□□□ -0.61
USP4-212ENST00000486549 SORL1Q92673 2214 aa11.24□□□□□ -0.61
USP4-212ENST00000486549 C9orf170A2RU37 121 aa11.23□□□□□ -0.61
USP4-212ENST00000486549 IGLV1-51P01701 117 aa11.23□□□□□ -0.61
USP4-212ENST00000486549 HOXB5P09067 269 aa11.23□□□□□ -0.61
USP4-212ENST00000486549 OR4E1P0C645 316 aa11.23□□□□□ -0.61
USP4-212ENST00000486549 ZNF846Q147U1 533 aa11.23□□□□□ -0.61
USP4-212ENST00000486549 FAM106AQ4KMX7 169 aa11.23□□□□□ -0.61
USP4-212ENST00000486549 C4orf46Q504U0 113 aa11.23□□□□□ -0.61
USP4-212ENST00000486549 GPHB5Q86YW7 130 aa11.23□□□□□ -0.61
USP4-212ENST00000486549 LRTM2Q8N967 370 aa11.23□□□□□ -0.61
USP4-212ENST00000486549 BSCL2Q96G97 398 aaPredicted RBP11.23□□□□□ -0.61
USP4-212ENST00000486549 C20orf85Q9H1P6 137 aa11.23□□□□□ -0.61
USP4-212ENST00000486549 TRAV6A0A075B6T7 132 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 F8W735 103 aaPredicted RBP11.22□□□□□ -0.61
USP4-212ENST00000486549 LGALS9O00182 355 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 MFAP4P55083 255 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 TNFRSF9Q07011 255 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 DHRS2Q13268 280 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 UNQ9165/PRO28630Q6UXU0 137 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 LYG2Q86SG7 212 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 DYNLRB2Q8TF09 96 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 CACNG8Q8WXS5 425 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 CHRDL1Q9BU40 450 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 HIPK2Q9H2X6 1198 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 RBKSQ9H477 322 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 SELENOKQ9Y6D0 94 aa11.22□□□□□ -0.61
USP4-212ENST00000486549 A0A1B0GU03 582 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 C2orf70A6NJV1 201 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 GP9P14770 177 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 ADMP35318 185 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 OPRK1P41145 380 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 HTR2BP41595 481 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 SPSB3Q6PJ21 355 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 ADAMTSL5Q6ZMM2 481 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 SLC24A4Q8NFF2 622 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 COQ8AQ8NI60 647 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 HSPB7Q9UBY9 170 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 CACFD1Q9UGQ2 172 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 TBC1D24Q9ULP9 559 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 TMED3Q9Y3Q3 217 aa11.21□□□□□ -0.61
USP4-212ENST00000486549 TMEM213A2RRL7 107 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 A8MWP6 167 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 CORTO00230 105 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 GNG7O60262 68 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 ADAP1O75689 374 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 TCRBP04435 133 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 FOLR2P14207 255 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 BSXQ3C1V8 233 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 TM4SF20Q53R12 229 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 GGNBP1Q5YKI7 109 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 DUSP18Q8NEJ0 188 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 OR52B4Q8NGK2 314 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 DTD1Q8TEA8 209 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 ATP6V0BQ99437 205 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 ZNF436Q9C0F3 470 aaPredicted RBP11.2□□□□□ -0.62
USP4-212ENST00000486549 PALMDQ9NP74 551 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 NUDT15Q9NV35 164 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 GAR1Q9NY12 217 aaKnown RBP11.2□□□□□ -0.62
USP4-212ENST00000486549 SIGLEC8Q9NYZ4 499 aa11.2□□□□□ -0.62
USP4-212ENST00000486549 IGHV3OR16-8A0A075B7F1 116 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 FAM240BA0A1B0GVZ2 78 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 IZUMO1RA6ND01 250 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 NUPL2O15504 423 aaKnown RBP11.19□□□□□ -0.62
USP4-212ENST00000486549 UPK1BO75841 260 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 IFNA10P01566 189 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms