RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CCR6P51684 374 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 MFAP4P55083 255 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 SYNJ2BPP57105 145 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 SPCS3P61009 180 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 PRCDQ00LT1 54 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 RELQ04864 619 aaPredicted RBP6.22□□□□□ -1.41
USP40-216ENST00000485943 SMCO1Q147U7 214 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 CTRB2Q6GPI1 263 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 GTSCR1Q86UQ5 136 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 DUSP18Q8NEJ0 188 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 DLX4Q92988 240 aaPredicted RBP6.22□□□□□ -1.41
USP40-216ENST00000485943 IL22RA2Q969J5 263 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 TRIM63Q969Q1 353 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 RTBDNQ9BSG5 229 aaPredicted RBP6.22□□□□□ -1.41
USP40-216ENST00000485943 C20orf24Q9BUV8 137 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 ZC4H2Q9NQZ6 224 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 TMEM14BQ9NUH8 114 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 C21orf62Q9NYP8 219 aa6.22□□□□□ -1.41
USP40-216ENST00000485943 F11RQ9Y624 299 aaKnown RBP6.22□□□□□ -1.41
USP40-216ENST00000485943 IGHV3-21A0A0B4J1V1 117 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 A0A0B4J2A0 478 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 FAM25EA8MYX2 175 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 CDS2O95674 445 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 IFNA4P05014 189 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 CLEC3BP05452 202 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 HOXB5P09067 269 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 HTR2BP41595 481 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 NPBWR1P48145 328 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 BRWD1-AS2P59051 145 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 UBE2MP61081 183 aaKnown RBP6.21□□□□□ -1.42
USP40-216ENST00000485943 RAB11AP62491 216 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 BAK1Q16611 211 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 ASPHD1Q5U4P2 390 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 ETFRF1Q6IPR1 90 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 LCN12Q6JVE5 192 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 ZNF343Q6P1L6 599 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 TEPPQ6URK8 271 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 LINC00299Q6ZSB3 139 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 SELENOHQ8IZQ5 122 aaKnown RBP6.21□□□□□ -1.42
USP40-216ENST00000485943 CADM3Q8N126 398 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 OR1P1Q8NH06 330 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 VN1R17PQ8TDU5 208 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 SOSTQ9BQB4 213 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 GPN1Q9HCN4 374 aaPredicted RBP6.21□□□□□ -1.42
USP40-216ENST00000485943 NDUFA4L2Q9NRX3 87 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 SHPKQ9UHJ6 478 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 DNHD1Q96M86 4753 aa6.21□□□□□ -1.42
USP40-216ENST00000485943 TRAV6A0A075B6T7 132 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.2□□□□□ -1.42
USP40-216ENST00000485943 IGLC7A0M8Q6 106 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 OR2T8A6NH00 312 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 PPP5D1E7EU14 171 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 NDUFB6O95139 128 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 NDUFB8O95169 186 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 SFT2D2O95562 160 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 PRB2P02812 416 aaPredicted RBP6.2□□□□□ -1.42
USP40-216ENST00000485943 CRYGCP07315 174 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 PPP1R1AQ13522 171 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 TMEM187Q14656 261 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 ODF1Q14990 250 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 GUCA2BQ16661 112 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 IZUMO4Q1ZYL8 232 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 C19orf54Q5BKX5 351 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 SPSB3Q6PJ21 355 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 RBPMS2Q6ZRY4 209 aaKnown RBP6.2□□□□□ -1.42
USP40-216ENST00000485943 WFDC9Q8NEX5 89 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 SLC24A4Q8NFF2 622 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 OR9G4Q8NGQ1 327 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 MYOZ3Q8TDC0 251 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 GLYATL2Q8WU03 294 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 TMEM230Q96A57 120 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 GALNT14Q96FL9 552 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 BSCL2Q96G97 398 aaPredicted RBP6.2□□□□□ -1.42
USP40-216ENST00000485943 CIB3Q96Q77 187 aaPredicted RBP6.2□□□□□ -1.42
USP40-216ENST00000485943 GINS3Q9BRX5 216 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 C20orf85Q9H1P6 137 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 ZNF256Q9Y2P7 627 aaPredicted RBP6.2□□□□□ -1.42
USP40-216ENST00000485943 UFC1Q9Y3C8 167 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 TMED3Q9Y3Q3 217 aa6.2□□□□□ -1.42
USP40-216ENST00000485943 IGLV11-55A0A075B6I3 123 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 TRBV9A0A0B4J1U6 114 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 A0A1B0GU03 582 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 C5orf51A6NDU8 294 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 MFSD2BA6NFX1 497 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 E7EUB6 86 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 L7N2F9 121 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 TGOLN2O43493 480 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 OR2C1O95371 312 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 BRI3O95415 125 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 MT-CO2P00403 227 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 IGKV1-39P01597 117 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 IGKV1-5P01602 117 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 IGKV1D-39P04432 117 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 FABP1P07148 127 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 OR4E1P0C645 316 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 NPY1RP25929 384 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 VAMP2P63027 116 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 SSBP2P81877 361 aaPredicted RBP6.19□□□□□ -1.42
USP40-216ENST00000485943 WT1-ASQ06250 92 aa6.19□□□□□ -1.42
USP40-216ENST00000485943 CD69Q07108 199 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms