RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 FAM181BA6NEQ2 426 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 TFF1P04155 84 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 FBLN7Q53RD9 439 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 DHRS13Q6UX07 377 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 WDR82Q6UXN9 313 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 OR4C5Q8NGB2 326 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 CT55Q8WUE5 264 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 NEUROG1Q92886 237 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 IGF2BP2-AS1Q96M15 143 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 SAP30LQ9HAJ7 183 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 METRNQ9UJH8 293 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 GGTLC3B5MD39 225 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 M0R2Z0 102 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 IGLV2-8P01709 118 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 SLAQ13239 276 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 EDDM3AQ14507 147 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 LCN12Q6JVE5 192 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 KLF14Q8TD94 323 aaPredicted RBP10.92□□□□□ -0.66
USP40-214ENST00000483519 C19orf24Q9BVV8 132 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 RNF24Q9Y225 148 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 FOXA2Q9Y261 457 aaPredicted RBP10.92□□□□□ -0.66
USP40-214ENST00000483519 A0A1W2PRE2 83 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 IGLC7A0M8Q6 106 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 HSPE1P61604 102 aaKnown RBP10.92□□□□□ -0.66
USP40-214ENST00000483519 UBE2G1P62253 170 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 TBR1Q16650 682 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 RPL39P5Q59GN2 51 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 MUC15Q8N387 334 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 PLPPR2Q96GM1 343 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 DCTN5Q9BTE1 182 aa10.92□□□□□ -0.66
USP40-214ENST00000483519 CACNA1DQ01668 2161 aa10.91□□□□□ -0.66
USP40-214ENST00000483519 TET2Q6N021 2002 aaPredicted RBP10.91□□□□□ -0.66
USP40-214ENST00000483519 MPV17P39210 176 aa10.91□□□□□ -0.66
USP40-214ENST00000483519 HOXA4Q00056 320 aaPredicted RBP10.91□□□□□ -0.66
USP40-214ENST00000483519 TNXAQ16473 311 aa10.91□□□□□ -0.66
USP40-214ENST00000483519 Q56UQ5 140 aa10.91□□□□□ -0.66
USP40-214ENST00000483519 HES3Q5TGS1 186 aa10.91□□□□□ -0.66
USP40-214ENST00000483519 C6orf15Q6UXA7 325 aaPredicted RBP10.91□□□□□ -0.66
USP40-214ENST00000483519 LYG1Q8N1E2 194 aa10.91□□□□□ -0.66
USP40-214ENST00000483519 OR8B3Q8NGG8 313 aa10.91□□□□□ -0.66
USP40-214ENST00000483519 OR8B2Q96RD0 313 aa10.91□□□□□ -0.66
USP40-214ENST00000483519 LOC105371242A0A075B767 164 aa10.91□□□□□ -0.66
USP40-214ENST00000483519 H0YJW9 148 aa10.91□□□□□ -0.66
USP40-214ENST00000483519 KLF5Q13887 457 aaPredicted RBP10.91□□□□□ -0.66
USP40-214ENST00000483519 TMEM14BQ9NUH8 114 aa10.91□□□□□ -0.66
USP40-214ENST00000483519 DOCK10Q96BY6 2186 aa10.9□□□□□ -0.66
USP40-214ENST00000483519 A4D1N5 150 aa10.9□□□□□ -0.66
USP40-214ENST00000483519 Q6ZVH6 145 aa10.9□□□□□ -0.66
USP40-214ENST00000483519 FAM90A1Q86YD7 464 aa10.9□□□□□ -0.66
USP40-214ENST00000483519 SPACA3Q8IXA5 215 aa10.9□□□□□ -0.66
USP40-214ENST00000483519 OR4F17Q8NGA8 305 aa10.9□□□□□ -0.66
USP40-214ENST00000483519 ZNF503Q96F45 646 aa10.9□□□□□ -0.66
USP40-214ENST00000483519 OR2V2Q96R30 315 aa10.9□□□□□ -0.66
USP40-214ENST00000483519 DOCK7Q96N67 2140 aa10.9□□□□□ -0.66
USP40-214ENST00000483519 WDFY3Q8IZQ1 3526 aa10.9□□□□□ -0.66
USP40-214ENST00000483519 TRIB1Q96RU8 372 aa10.9□□□□□ -0.66
USP40-214ENST00000483519 IFI27L2Q9H2X8 130 aa10.9□□□□□ -0.66
USP40-214ENST00000483519 PCSK5Q92824 1860 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 TRAV30A0A087WSZ9 112 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 IGLL1P15814 213 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 COL8A2P25067 703 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 MFAP2P55001 183 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 OR4A47Q6IF82 309 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 FAM214BQ7L5A3 538 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 DDB2Q92466 427 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 VPS13AQ96RL7 3174 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 AHRRA9YTQ3 701 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 CA1P00915 261 aaPredicted RBP10.89□□□□□ -0.67
USP40-214ENST00000483519 CEACAM8P31997 349 aaPredicted RBP10.89□□□□□ -0.67
USP40-214ENST00000483519 EBLN2Q6P2I7 272 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 RNASEKQ6P5S7 137 aaKnown RBP10.89□□□□□ -0.67
USP40-214ENST00000483519 FAM231DQ6ZW35 169 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 CHRDL1Q9BU40 450 aa10.89□□□□□ -0.67
USP40-214ENST00000483519 NDUFS8O00217 210 aa10.88□□□□□ -0.67
USP40-214ENST00000483519 TIMM8AO60220 97 aaPredicted RBP10.88□□□□□ -0.67
USP40-214ENST00000483519 C8orf88P0DMB2 117 aa10.88□□□□□ -0.67
USP40-214ENST00000483519 PRDX2P32119 198 aa10.88□□□□□ -0.67
USP40-214ENST00000483519 VAMP3Q15836 100 aa10.88□□□□□ -0.67
USP40-214ENST00000483519 FAM162BQ5T6X4 162 aa10.88□□□□□ -0.67
USP40-214ENST00000483519 CD177Q8N6Q3 437 aa10.88□□□□□ -0.67
USP40-214ENST00000483519 GRAMD2BQ96HH9 432 aa10.88□□□□□ -0.67
USP40-214ENST00000483519 HINT2Q9BX68 163 aa10.88□□□□□ -0.67
USP40-214ENST00000483519 GSX1Q9H4S2 264 aaPredicted RBP10.88□□□□□ -0.67
USP40-214ENST00000483519 TNFRSF19Q9NS68 423 aa10.88□□□□□ -0.67
USP40-214ENST00000483519 KNTC1P50748 2209 aa10.88□□□□□ -0.67
USP40-214ENST00000483519 A0A1W2PN81 502 aa10.88□□□□□ -0.67
USP40-214ENST00000483519 LRRC10Q5BKY1 277 aa10.88□□□□□ -0.67
USP40-214ENST00000483519 SSBP3Q9BWW4 388 aaPredicted RBP10.88□□□□□ -0.67
USP40-214ENST00000483519 MRPL32Q9BYC8 188 aaKnown RBP10.88□□□□□ -0.67
USP40-214ENST00000483519 C2orf70A6NJV1 201 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 F2RL2O00254 374 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 OR2J3O76001 311 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 INO80CQ6PI98 192 aaPredicted RBP10.87□□□□□ -0.67
USP40-214ENST00000483519 ABHD17AQ96GS6 310 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 TMEM70Q9BUB7 260 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 SPRY4Q9C004 299 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 OR51B2Q9Y5P1 312 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 ZNF134P52741 427 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 LOXL3P58215 753 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 RPS20P60866 119 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms