RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CA5BP1Q8WTZ4 195 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 OR1E3Q8WZA6 343 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 ST8SIA1Q92185 356 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 LSM10Q969L4 123 aaKnown RBP3.97□□□□□ -1.77
USP40-213ENST00000483216 C8orf44Q96CB5 159 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 STARD4Q96DR4 205 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 TM4SF19Q96DZ7 209 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 SFRP2Q96HF1 295 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 SMIM10Q96HG1 83 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 TSPAN32Q96QS1 320 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 SMIM3Q9BZL3 60 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 PBOV1Q9GZY1 135 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 TMEM222Q9H0R3 208 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 VCX2Q9H322 139 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 CBLN4Q9NTU7 201 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 MRPL27Q9P0M9 148 aaKnown RBP3.97□□□□□ -1.77
USP40-213ENST00000483216 PEF1Q9UBV8 284 aaKnown RBP3.97□□□□□ -1.77
USP40-213ENST00000483216 POLR1DQ9Y2S0 133 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 PXMP4Q9Y6I8 212 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 CHD9Q3L8U1 2897 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 MYO7AQ13402 2215 aa3.97□□□□□ -1.77
USP40-213ENST00000483216 LRRK1Q38SD2 2015 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 IGHV2OR16-5A0A0B4J2B6 119 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 CEBPZOSA8MTT3 80 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 H0Y980 276 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 TRAPPC2LH3BP13 241 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 SDCBPO00560 298 aaPredicted RBP3.96□□□□□ -1.78
USP40-213ENST00000483216 ZNF207O43670 478 aaKnown RBP3.96□□□□□ -1.78
USP40-213ENST00000483216 RAMP3O60896 148 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 SCRG1O75711 98 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 OR2J2O76002 312 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 TDGF1P13385 188 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 IL12BP29460 328 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 APLNRP35414 380 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 RBX1P62877 108 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 RPS21P63220 83 aaKnown RBP3.96□□□□□ -1.78
USP40-213ENST00000483216 SEC11AP67812 179 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 HTD2P86397 168 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 GPM6BQ13491 265 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 RAB31Q13636 194 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 FAM53BQ14153 422 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 HNRNPA1L2Q32P51 320 aaKnown RBP3.96□□□□□ -1.78
USP40-213ENST00000483216 SPIN3Q5JUX0 258 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 PRAMEF20Q5VT98 475 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 STUMQ69YW2 141 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 FAM71F2Q6NXP2 309 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 TCF24Q7RTU0 167 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 LRP11Q86VZ4 500 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 ZNF547Q8IVP9 402 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 C1orf174Q8IYL3 243 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 TMEM156Q8N614 296 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 OR5D13Q8NGL4 314 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 PLPPR1Q8TBJ4 325 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 OR5P3Q8WZ94 311 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 RAB1CQ92928 201 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 SPTSSAQ969W0 71 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 VSTM2LQ96N03 204 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 RARRES2Q99969 163 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 RSPO3Q9BXY4 272 aaPredicted RBP3.96□□□□□ -1.78
USP40-213ENST00000483216 GNB1LQ9BYB4 327 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 TTTY10Q9BZA0 68 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 ZDHHC11Q9H8X9 412 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 PATZ1Q9HBE1 687 aaKnown RBP3.96□□□□□ -1.78
USP40-213ENST00000483216 ST20Q9HBF5 79 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 IL36GQ9NZH8 169 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 SPRR3Q9UBC9 169 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 FUT9Q9Y231 359 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 ST3GAL6Q9Y274 331 aa3.96□□□□□ -1.78
USP40-213ENST00000483216 RCL1Q9Y2P8 373 aaKnown RBP3.96□□□□□ -1.78
USP40-213ENST00000483216 RBM7Q9Y580 266 aaKnown RBP3.96□□□□□ -1.78
USP40-213ENST00000483216 MUC22E2RYF6 1773 aaPredicted RBP3.96□□□□□ -1.78
USP40-213ENST00000483216 KIAA1549LQ6ZVL6 1849 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 CCDC88CQ9P219 2028 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 TRANK1O15050 2925 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 NUP214P35658 2090 aaPredicted RBP3.95□□□□□ -1.78
USP40-213ENST00000483216 IGLV1-36A0A0B4J1U3 117 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 A6NDN8 102 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 DPRXA6NFQ7 191 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 OR5B21A6NL26 309 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 H0Y8G0 127 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 PANO1I0J062 215 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 M0R1X1 148 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 DHRS3O75911 302 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 S1PR2O95136 353 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 HAND1O96004 215 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 HLA-DQA1P01909 254 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 OR5AL1P0C617 328 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 LINC00869P0C866 280 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 NPY1RP25929 384 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 PPP1CCP36873 323 aaKnown RBP3.95□□□□□ -1.78
USP40-213ENST00000483216 RHOBP62745 196 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 RHOGP84095 191 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 UNC119Q13432 240 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 KISS1Q15726 138 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 BATFQ16520 125 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 PRSS8Q16651 343 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 LRRC75BQ2VPJ9 315 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 DEFB134Q4QY38 66 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 FAM120AOSQ5T036 256 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 ABHD12BQ7Z5M8 362 aaPredicted RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms