RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TMEM106BQ9NUM4 274 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 OPTCQ9UBM4 332 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 CYSLTR1Q9Y271 337 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 TOPBP1Q92547 1522 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 CACNA1GO43497 2377 aa2.24□□□□□ -2.05
UPF3B-203ENST00000478840 A0A0D9SEW6 157 aa2.24□□□□□ -2.05
UPF3B-203ENST00000478840 C19orf84I3L1E1 186 aa2.24□□□□□ -2.05
UPF3B-203ENST00000478840 J3QQQ9 107 aa2.24□□□□□ -2.05
UPF3B-203ENST00000478840 NAPSAO96009 420 aa2.24□□□□□ -2.05
UPF3B-203ENST00000478840 P0DMU3 169 aa2.24□□□□□ -2.05
UPF3B-203ENST00000478840 FAM231AP0DMU4 169 aa2.24□□□□□ -2.05
UPF3B-203ENST00000478840 FAM231CP0DMU5 169 aa2.24□□□□□ -2.05
UPF3B-203ENST00000478840 CDC42P60953 191 aa2.24□□□□□ -2.05
UPF3B-203ENST00000478840 RPL26P61254 145 aaKnown RBP2.24□□□□□ -2.05
UPF3B-203ENST00000478840 SUPT4H1P63272 117 aaKnown RBP2.24□□□□□ -2.05
UPF3B-203ENST00000478840 KRR1Q13601 381 aaKnown RBP2.24□□□□□ -2.05
UPF3B-203ENST00000478840 Q6Q795 121 aa2.24□□□□□ -2.05
UPF3B-203ENST00000478840 PFN4Q8NHR9 129 aa2.24□□□□□ -2.05
UPF3B-203ENST00000478840 C11orf40Q8WZ69 217 aa2.24□□□□□ -2.05
UPF3B-203ENST00000478840 RPL26L1Q9UNX3 145 aaKnown RBP2.24□□□□□ -2.05
UPF3B-203ENST00000478840 HIVEP2P31629 2446 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 A0A1B0GVG6 124 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 TMEM238C9JI98 176 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 C1QBP02746 253 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 SERPINB9P50453 376 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 GOLT1AQ6ZVE7 132 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 TMED4Q7Z7H5 227 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 LYG2Q86SG7 212 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 SPACA4Q8TDM5 124 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 DCANP1Q8TF63 244 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 GPR146Q96CH1 333 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 SCGB3A1Q96QR1 104 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 TVP23BQ9NYZ1 205 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 SMARCA4P51532 1647 aa2.23□□□□□ -2.05
UPF3B-203ENST00000478840 MPDZO75970 2070 aa2.22□□□□□ -2.05
UPF3B-203ENST00000478840 HMSDA8MTL9 139 aa2.22□□□□□ -2.05
UPF3B-203ENST00000478840 E5RI56 91 aa2.22□□□□□ -2.05
UPF3B-203ENST00000478840 PGLYRP1O75594 196 aaPredicted RBP2.22□□□□□ -2.05
UPF3B-203ENST00000478840 CLPSP04118 112 aa2.22□□□□□ -2.05
UPF3B-203ENST00000478840 RPL19P84098 196 aaKnown RBP2.22□□□□□ -2.05
UPF3B-203ENST00000478840 POU6F1Q14863 301 aa2.22□□□□□ -2.05
UPF3B-203ENST00000478840 HSPB9Q9BQS6 159 aa2.22□□□□□ -2.05
UPF3B-203ENST00000478840 VWDEQ8N2E2 1590 aa2.22□□□□□ -2.05
UPF3B-203ENST00000478840 DOCK3Q8IZD9 2030 aa2.22□□□□□ -2.05
UPF3B-203ENST00000478840 DISP1Q96F81 1524 aa2.22□□□□□ -2.05
UPF3B-203ENST00000478840 ICE1Q9Y2F5 2266 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 PXDNLA1KZ92 1463 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 TRAV4A0A0B4J268 109 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 TRAPPC13A5PLN9 417 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 MEIS3P1A6NDR6 274 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 OR5F1O95221 314 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 ERP29P30040 261 aaKnown RBP2.21□□□□□ -2.06
UPF3B-203ENST00000478840 MIR17HGQ75NE6 70 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 KRTAP13-1Q8IUC0 172 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 TMEM86AQ8N2M4 240 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 RNASE11Q8TAA1 199 aaKnown RBP2.21□□□□□ -2.06
UPF3B-203ENST00000478840 SLC25A40Q8TBP6 338 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 SLC39A9Q9NUM3 307 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 ERGIC3Q9Y282 383 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 NCKAP5O14513 1909 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 BAHCC1Q9P281 2608 aa2.21□□□□□ -2.06
UPF3B-203ENST00000478840 PTPRBP23467 1997 aa2.2□□□□□ -2.06
UPF3B-203ENST00000478840 KIF1BO60333 1816 aa2.2□□□□□ -2.06
UPF3B-203ENST00000478840 TRBV19A0A075B6N1 114 aa2.2□□□□□ -2.06
UPF3B-203ENST00000478840 ZNF860A6NHJ4 632 aa2.2□□□□□ -2.06
UPF3B-203ENST00000478840 J3QRK9 145 aa2.2□□□□□ -2.06
UPF3B-203ENST00000478840 CIAO1O76071 339 aa2.2□□□□□ -2.06
UPF3B-203ENST00000478840 C1QCP02747 245 aa2.2□□□□□ -2.06
UPF3B-203ENST00000478840 NDUFA5Q16718 116 aa2.2□□□□□ -2.06
UPF3B-203ENST00000478840 FAM173BQ6P4H8 233 aa2.2□□□□□ -2.06
UPF3B-203ENST00000478840 LRRC28Q86X40 367 aaPredicted RBP2.2□□□□□ -2.06
UPF3B-203ENST00000478840 TMEM106AQ96A25 262 aa2.2□□□□□ -2.06
UPF3B-203ENST00000478840 PYCARDQ9ULZ3 195 aa2.2□□□□□ -2.06
UPF3B-203ENST00000478840 ZNF106Q9H2Y7 1883 aaKnown RBP2.2□□□□□ -2.06
UPF3B-203ENST00000478840 KIAA2026Q5HYC2 2103 aa2.2□□□□□ -2.06
UPF3B-203ENST00000478840 IGKV1-16P04430 117 aa2.19□□□□□ -2.06
UPF3B-203ENST00000478840 METTL15P1P0C7V9 234 aa2.19□□□□□ -2.06
UPF3B-203ENST00000478840 SMIM17P0DL12 118 aa2.19□□□□□ -2.06
UPF3B-203ENST00000478840 GNG10P50151 68 aa2.19□□□□□ -2.06
UPF3B-203ENST00000478840 AQP4P55087 323 aa2.19□□□□□ -2.06
UPF3B-203ENST00000478840 DEFB103AP81534 67 aa2.19□□□□□ -2.06
UPF3B-203ENST00000478840 LINC01554Q52M75 96 aa2.19□□□□□ -2.06
UPF3B-203ENST00000478840 LCA10Q71F78 164 aa2.19□□□□□ -2.06
UPF3B-203ENST00000478840 BAIAP2Q9UQB8 552 aa2.19□□□□□ -2.06
UPF3B-203ENST00000478840 FMN1Q68DA7 1419 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 TRGC1P0CF51 173 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 S100A4P26447 101 aaKnown RBP2.18□□□□□ -2.06
UPF3B-203ENST00000478840 CASP1P29466 404 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 EIF2B2P49770 351 aaKnown RBP2.18□□□□□ -2.06
UPF3B-203ENST00000478840 YPEL3P61236 119 aaPredicted RBP2.18□□□□□ -2.06
UPF3B-203ENST00000478840 SLC38A11Q08AI6 406 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 DEFB128Q7Z7B8 93 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 DHFR2Q86XF0 187 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 BPIFA4PQ86YQ2 179 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 CLVS1Q8IUQ0 354 aaPredicted RBP2.18□□□□□ -2.06
UPF3B-203ENST00000478840 HIST3H2BBQ8N257 126 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 C9orf163Q8N9P6 203 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 OR52R1Q8NGF1 315 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 TMEM133Q9H2Q1 129 aa2.18□□□□□ -2.06
UPF3B-203ENST00000478840 C8orf4Q9NR00 106 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms