RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 BTNL8Q6UX41 500 aa17.56■□□□□ 0.4
C9orf3-215ENST00000478473 FAM219AQ8IW50 185 aa17.56■□□□□ 0.4
C9orf3-215ENST00000478473 MUC7Q8TAX7 377 aa17.56■□□□□ 0.4
C9orf3-215ENST00000478473 C6orf62Q9GZU0 229 aaPredicted RBP17.56■□□□□ 0.4
C9orf3-215ENST00000478473 EDA2RQ9HAV5 297 aa17.56■□□□□ 0.4
C9orf3-215ENST00000478473 A0A0G2JRQ6 117 aa17.55■□□□□ 0.4
C9orf3-215ENST00000478473 C15orf62A8K5M9 175 aa17.55■□□□□ 0.4
C9orf3-215ENST00000478473 OR11H12B2RN74 326 aa17.55■□□□□ 0.4
C9orf3-215ENST00000478473 ST8SIA3O43173 380 aa17.55■□□□□ 0.4
C9orf3-215ENST00000478473 MFAP4P55083 255 aa17.55■□□□□ 0.4
C9orf3-215ENST00000478473 ANKRD55Q3KP44 614 aa17.55■□□□□ 0.4
C9orf3-215ENST00000478473 SLC16A13Q7RTY0 426 aa17.55■□□□□ 0.4
C9orf3-215ENST00000478473 C14orf166Q9Y224 244 aaKnown RBP17.55■□□□□ 0.4
C9orf3-215ENST00000478473 DNAH7Q8WXX0 4024 aa17.54■□□□□ 0.4
C9orf3-215ENST00000478473 IGHV3-21A0A0B4J1V1 117 aa17.54■□□□□ 0.4
C9orf3-215ENST00000478473 TEX13DA0A0J9YY54 714 aaPredicted RBP17.54■□□□□ 0.4
C9orf3-215ENST00000478473 RBMY1BA6NDE4 496 aaKnown RBP17.54■□□□□ 0.4
C9orf3-215ENST00000478473 RBMY1EA6NEQ0 496 aaKnown RBP17.54■□□□□ 0.4
C9orf3-215ENST00000478473 RBMY1DP0C7P1 496 aaKnown RBP17.54■□□□□ 0.4
C9orf3-215ENST00000478473 DHODHQ02127 395 aa17.54■□□□□ 0.4
C9orf3-215ENST00000478473 TRIM16LQ309B1 348 aa17.54■□□□□ 0.4
C9orf3-215ENST00000478473 DEFB125Q8N687 156 aa17.54■□□□□ 0.4
C9orf3-215ENST00000478473 RRNAD1Q96FB5 475 aaKnown RBP17.54■□□□□ 0.4
C9orf3-215ENST00000478473 OR10C1Q96KK4 312 aa17.54■□□□□ 0.4
C9orf3-215ENST00000478473 NAA60Q9H7X0 242 aa17.54■□□□□ 0.4
C9orf3-215ENST00000478473 CRYM-AS1A6NIL9 109 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 TSPAN4O14817 238 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 MT-CO2P00403 227 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 OR5AC1P0C628 307 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 RELQ04864 619 aaPredicted RBP17.53■□□□□ 0.4
C9orf3-215ENST00000478473 BSXQ3C1V8 233 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 Q56UQ5 140 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 Q6ZRM9 215 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 OR51S1Q8NGJ8 323 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 OR52E5Q8NH55 327 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 MCFD2Q8NI22 146 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 LHFPL5Q8TAF8 219 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 RBPMSQ93062 196 aaKnown RBP17.53■□□□□ 0.4
C9orf3-215ENST00000478473 MISP3Q96FF7 219 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 GALNT14Q96FL9 552 aa17.53■□□□□ 0.4
C9orf3-215ENST00000478473 SPAG8Q99932 426 aaPredicted RBP17.53■□□□□ 0.4
C9orf3-215ENST00000478473 FABP12A6NFH5 140 aa17.52■□□□□ 0.4
C9orf3-215ENST00000478473 NUPL2O15504 423 aaKnown RBP17.52■□□□□ 0.4
C9orf3-215ENST00000478473 SLC35G3Q8N808 338 aa17.52■□□□□ 0.4
C9orf3-215ENST00000478473 HIPK2Q9H2X6 1198 aa17.52■□□□□ 0.4
C9orf3-215ENST00000478473 TMEM56-RWDD3S4R434 201 aa17.52■□□□□ 0.4
C9orf3-215ENST00000478473 RNASE2P10153 161 aaKnown RBP17.51■□□□□ 0.39
C9orf3-215ENST00000478473 UBAC2Q8NBM4 344 aa17.51■□□□□ 0.39
C9orf3-215ENST00000478473 OR52B4Q8NGK2 314 aa17.51■□□□□ 0.39
C9orf3-215ENST00000478473 RBM38Q9H0Z9 239 aaKnown RBP17.51■□□□□ 0.39
C9orf3-215ENST00000478473 WFDC10AQ9H1F0 79 aa17.51■□□□□ 0.39
C9orf3-215ENST00000478473 SRD5A3Q9H8P0 318 aa17.51■□□□□ 0.39
C9orf3-215ENST00000478473 SCP2D1Q9UJQ7 156 aa17.51■□□□□ 0.39
C9orf3-215ENST00000478473 CORTO00230 105 aa17.5■□□□□ 0.39
C9orf3-215ENST00000478473 SCAF4O95104 1147 aaKnown RBP17.5■□□□□ 0.39
C9orf3-215ENST00000478473 IFNA17P01571 189 aa17.5■□□□□ 0.39
C9orf3-215ENST00000478473 SNCAP37840 140 aa17.5■□□□□ 0.39
C9orf3-215ENST00000478473 SPCS3P61009 180 aa17.5■□□□□ 0.39
C9orf3-215ENST00000478473 RBPMS2Q6ZRY4 209 aaKnown RBP17.5■□□□□ 0.39
C9orf3-215ENST00000478473 SELENOHQ8IZQ5 122 aaKnown RBP17.5■□□□□ 0.39
C9orf3-215ENST00000478473 IL22RA2Q969J5 263 aa17.5■□□□□ 0.39
C9orf3-215ENST00000478473 SCGB3A2Q96PL1 93 aa17.5■□□□□ 0.39
C9orf3-215ENST00000478473 FAM110AQ9BQ89 295 aa17.5■□□□□ 0.39
C9orf3-215ENST00000478473 PDCD10Q9BUL8 212 aa17.5■□□□□ 0.39
C9orf3-215ENST00000478473 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.5■□□□□ 0.39
C9orf3-215ENST00000478473 SMPXQ9UHP9 88 aa17.5■□□□□ 0.39
C9orf3-215ENST00000478473 ETV6P41212 452 aa17.49■□□□□ 0.39
C9orf3-215ENST00000478473 SUB1P53999 127 aaKnown RBP eCLIP17.49■□□□□ 0.39
C9orf3-215ENST00000478473 SPINK9Q5DT21 86 aa17.49■□□□□ 0.39
C9orf3-215ENST00000478473 CASC10Q5T4H9 136 aa17.49■□□□□ 0.39
C9orf3-215ENST00000478473 TRIM63Q969Q1 353 aa17.49■□□□□ 0.39
C9orf3-215ENST00000478473 TMEM230Q96A57 120 aa17.49■□□□□ 0.39
C9orf3-215ENST00000478473 SELENOKQ9Y6D0 94 aa17.49■□□□□ 0.39
C9orf3-215ENST00000478473 ZNF701M0R085 212 aaPredicted RBP17.48■□□□□ 0.39
C9orf3-215ENST00000478473 NPBWR1P48145 328 aa17.48■□□□□ 0.39
C9orf3-215ENST00000478473 LAMTOR1Q6IAA8 161 aa17.48■□□□□ 0.39
C9orf3-215ENST00000478473 DEDD2Q8WXF8 326 aa17.48■□□□□ 0.39
C9orf3-215ENST00000478473 CACFD1Q9UGQ2 172 aa17.48■□□□□ 0.39
C9orf3-215ENST00000478473 V9GYH0 126 aa17.48■□□□□ 0.39
C9orf3-215ENST00000478473 KLF9Q13886 244 aaPredicted RBP17.47■□□□□ 0.39
C9orf3-215ENST00000478473 TMEM187Q14656 261 aa17.47■□□□□ 0.39
C9orf3-215ENST00000478473 DUSP18Q8NEJ0 188 aa17.47■□□□□ 0.39
C9orf3-215ENST00000478473 PINX1Q96BK5 328 aaKnown RBP17.47■□□□□ 0.39
C9orf3-215ENST00000478473 GPR146Q96CH1 333 aa17.47■□□□□ 0.39
C9orf3-215ENST00000478473 C20orf24Q9BUV8 137 aa17.47■□□□□ 0.39
C9orf3-215ENST00000478473 IGHV7-4-1A0A0J9YVY3 117 aa17.46■□□□□ 0.39
C9orf3-215ENST00000478473 GNG7O60262 68 aa17.46■□□□□ 0.39
C9orf3-215ENST00000478473 RNASE11Q8TAA1 199 aaKnown RBP17.46■□□□□ 0.39
C9orf3-215ENST00000478473 KCNIP3Q9Y2W7 256 aa17.46■□□□□ 0.39
C9orf3-215ENST00000478473 CHEK1O14757 476 aa17.45■□□□□ 0.38
C9orf3-215ENST00000478473 TMEM50AO95807 157 aa17.45■□□□□ 0.38
C9orf3-215ENST00000478473 IGHV3-48P01763 117 aa17.45■□□□□ 0.38
C9orf3-215ENST00000478473 HOXA1P49639 335 aaPredicted RBP17.45■□□□□ 0.38
C9orf3-215ENST00000478473 SUPT4H1P63272 117 aaKnown RBP17.45■□□□□ 0.38
C9orf3-215ENST00000478473 ZNF79Q15937 498 aa17.45■□□□□ 0.38
C9orf3-215ENST00000478473 TMEM268Q5VZI3 342 aa17.45■□□□□ 0.38
C9orf3-215ENST00000478473 FNDC4Q9H6D8 234 aaPredicted RBP17.45■□□□□ 0.38
C9orf3-215ENST00000478473 RYR3Q15413 4870 aa17.44■□□□□ 0.38
C9orf3-215ENST00000478473 LYL1P12980 280 aa17.44■□□□□ 0.38
C9orf3-215ENST00000478473 HTR2BP41595 481 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms