RNA–Protein interactions for RNA: ENST00000477949.1

USP33-208, Transcript of ubiquitin specific peptidase 33, human

TSL 2

Gene USP33, Length 663 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP33-208	ENST00000477949	PUS1	Q9Y606	427 aa	Known RBP eCLIP	4.37	□□□□□ -1.71
USP33-208	ENST00000477949	RFNG	Q9Y644	331 aa		4.37	□□□□□ -1.71
USP33-208	ENST00000477949	TRBV6-7	A0A0A0MS04	114 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	TRAV14DV4	A0A0A6YYC5	116 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	IGHV3-21	A0A0B4J1V1	117 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	RPS10-NUDT3	A0A1W2PQS6	291 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	RAB27B	O00194	218 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	FCGR3B	O75015	233 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	IFNA5	P01569	189 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	CD5	P06127	495 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	LIMS3	P0CW19	117 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	LIMS4	P0CW20	117 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	HLA-G	P17693	338 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	CALB2	P22676	271 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	FGF9	P31371	208 aa	Predicted RBP	4.36	□□□□□ -1.71
USP33-208	ENST00000477949	RPL8	P62917	257 aa	Known RBP	4.36	□□□□□ -1.71
USP33-208	ENST00000477949	QRFP	P83859	136 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	RPL36A	P83881	106 aa	Known RBP	4.36	□□□□□ -1.71
USP33-208	ENST00000477949	WT1-AS	Q06250	92 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	EIF4EBP1	Q13541	118 aa	Predicted RBP	4.36	□□□□□ -1.71
USP33-208	ENST00000477949	CCDC58	Q4VC31	144 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	MZT2A	Q6P582	158 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949		Q6ZSA8	131 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	GDPD1	Q8N9F7	314 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	RNF125	Q96EQ8	232 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	RAB40C	Q96S21	281 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	C1QTNF4	Q9BXJ3	329 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	GABARAPL3	Q9BY60	117 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	GABARAPL1	Q9H0R8	117 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	FNDC4	Q9H6D8	234 aa	Predicted RBP	4.36	□□□□□ -1.71
USP33-208	ENST00000477949	C12orf4	Q9NQ89	552 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	MGAT4A	Q9UM21	535 aa		4.36	□□□□□ -1.71
USP33-208	ENST00000477949	TRAV3	A0A0B4J244	114 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	IGHV3-66	A0A0C4DH42	116 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	SAC3D1	A6NKF1	404 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	SNTN	A6NMZ2	147 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	TRDC	B7Z8K6	153 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949		H3BMM0	161 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	DNASE2	O00115	360 aa	Predicted RBP	4.35	□□□□□ -1.71
USP33-208	ENST00000477949	SOCS1	O15524	211 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	ST8SIA3	O43173	380 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	DIRAS3	O95661	229 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	LALBA	P00709	142 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	GNRHR	P30968	328 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	SERPINB10	P48595	397 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	GBX2	P52951	348 aa	Predicted RBP	4.35	□□□□□ -1.71
USP33-208	ENST00000477949	TMEM50B	P56557	158 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	DAD1	P61803	113 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	PLA2G7	Q13093	441 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	TIMM50	Q3ZCQ8	353 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	YIF1B	Q5BJH7	314 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	OR2B11	Q5JQS5	317 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	ZNF773	Q6PK81	442 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	C1orf158	Q8N1D5	194 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	DUSP18	Q8NEJ0	188 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	OR10W1	Q8NGF6	305 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	OR4A4P	Q8NGN8	299 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	VSTM2A	Q8TAG5	236 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	GGH	Q92820	318 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	PGLYRP3	Q96LB9	341 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	CIB1	Q99828	191 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	NXF2	Q9GZY0	626 aa	Known RBP	4.35	□□□□□ -1.71
USP33-208	ENST00000477949	MED4	Q9NPJ6	270 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	BET1L	Q9NYM9	111 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	THYN1	Q9P016	225 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	GHRL	Q9UBU3	117 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	RABAC1	Q9UI14	185 aa		4.35	□□□□□ -1.71
USP33-208	ENST00000477949	TMEM14DP	A8MWL7	114 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	BET1	O15155	118 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	OGG1	O15527	345 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	FABP7	O15540	132 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	GABRB1	P18505	474 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	REL	Q04864	619 aa	Predicted RBP	4.34	□□□□□ -1.71
USP33-208	ENST00000477949	ATP6AP1	Q15904	470 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949		Q499Y3	187 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	PIK3CD-AS1	Q5SR53	167 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	OGFRL1	Q5TC84	451 aa	Predicted RBP	4.34	□□□□□ -1.71
USP33-208	ENST00000477949	KRTAP5-1	Q6L8H4	278 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	RPL22L1	Q6P5R6	122 aa	Known RBP	4.34	□□□□□ -1.71
USP33-208	ENST00000477949	TOMM20L	Q6UXN7	152 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	KCTD9	Q7L273	389 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	LRRTM1	Q86UE6	522 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	H1FOO	Q8IZA3	346 aa	Predicted RBP	4.34	□□□□□ -1.71
USP33-208	ENST00000477949	FAM89B	Q8N5H3	189 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	ZNF709	Q8N972	641 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	CCDC124	Q96CT7	223 aa	Known RBP	4.34	□□□□□ -1.71
USP33-208	ENST00000477949	SMIM19	Q96E16	107 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	UHRF2	Q96PU4	802 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	UQCC2	Q9BRT2	126 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	TMEM59	Q9BXS4	323 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	LPAR5	Q9H1C0	372 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	PLEKHJ1	Q9NW61	149 aa		4.34	□□□□□ -1.71
USP33-208	ENST00000477949	MRPS16	Q9Y3D3	137 aa	Known RBP	4.34	□□□□□ -1.71
USP33-208	ENST00000477949	F11R	Q9Y624	299 aa	Known RBP	4.34	□□□□□ -1.71
USP33-208	ENST00000477949		A0A1W2PPK0	400 aa		4.33	□□□□□ -1.72
USP33-208	ENST00000477949	PLAC8L1	A1L4L8	177 aa		4.33	□□□□□ -1.72
USP33-208	ENST00000477949	SERPINE2	P07093	398 aa		4.33	□□□□□ -1.72
USP33-208	ENST00000477949	CD37	P11049	281 aa		4.33	□□□□□ -1.72
USP33-208	ENST00000477949	HLA-DRB4	P13762	266 aa		4.33	□□□□□ -1.72
USP33-208	ENST00000477949	GNB3	P16520	340 aa		4.33	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms