RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 LPAR6P43657 344 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 CD81P60033 236 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 DEFB114Q30KQ6 69 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 PHLDA2Q53GA4 152 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 SLC38A6Q8IZM9 456 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 CADM3Q8N126 398 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 GDPD1Q8N9F7 314 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 FCAMRQ8WWV6 532 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 LSM10Q969L4 123 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 TSC22D3Q99576 134 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 TM2D3Q9BRN9 247 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 FAM212BQ9NTI7 297 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 SLC2A8Q9NY64 477 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 FKBP11Q9NYL4 201 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 PRNDQ9UKY0 176 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 S4R3C0 116 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 STAB2Q8WWQ8 2551 aa5.13□□□□□ -1.59
CCDC88A-213ENST00000476903 HUWE1Q7Z6Z7 4374 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 TEX50A0A1B0GTY4 177 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 MFSD2BA6NFX1 497 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 A8MWP6 167 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 IFNA6P05013 189 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 SERPINE2P07093 398 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 OR13C7P0DN81 318 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 ZNF182P17025 639 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 CBLN1P23435 193 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 PTBP1P26599 531 aaKnown RBP eCLIP5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 GPR183P32249 361 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 UCP3P55916 312 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 BLOC1S1P78537 153 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 WT1-ASQ06250 92 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 CTF1Q16619 201 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 GUCA2BQ16661 112 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 ZNF585BQ52M93 769 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 GPR107Q5VW38 600 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 ZNF57Q68EA5 555 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 PLET1Q6UQ28 207 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 ADAMTSL5Q6ZMM2 481 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 TBC1D26Q86UD7 250 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 OR10W1Q8NGF6 305 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 OR1L6Q8NGR2 347 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 OR5B3Q8NH48 314 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 MUC7Q8TAX7 377 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 ZNF502Q8TBZ5 544 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 VN1R17PQ8TDU5 208 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 C15orf40Q8WUR7 153 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 TMEM56Q96MV1 263 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 NEURL2Q9BR09 285 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 HINT2Q9BX68 163 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 MRPS26Q9BYN8 205 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 NAA50Q9GZZ1 169 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 PALMDQ9NP74 551 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 ZC4H2Q9NQZ6 224 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 NDUFA4L2Q9NRX3 87 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 NSG2Q9Y328 171 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 OR51B2Q9Y5P1 312 aa5.12□□□□□ -1.59
CCDC88A-213ENST00000476903 TMEM213A2RRL7 107 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 C15orf61A6NNL5 157 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 ZNF785A8K8V0 405 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 M0QYG6 137 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 PGAM2P15259 253 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 TBPP20226 339 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 EDN2P20800 178 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 SSTP61278 116 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 B2MP61769 119 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 NHLH2Q02577 135 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 HAGHQ16775 308 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 RNASE12Q5GAN4 147 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 RNASE10Q5GAN6 216 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 SLC25A24Q6NUK1 477 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 SPSB3Q6PJ21 355 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 SLC16A13Q7RTY0 426 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 H2BFWTQ7Z2G1 175 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 GPR141Q7Z602 305 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 ARRDC1Q8N5I2 433 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 CACNG8Q8WXS5 425 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 MARC2Q969Z3 335 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 BSCL2Q96G97 398 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 ZNF486Q96H40 463 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 ATP6V0BQ99437 205 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 ZNF436Q9C0F3 470 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 PLEKHA3Q9HB20 300 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 TMEM14BQ9NUH8 114 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 KLK11Q9UBX7 282 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 UFC1Q9Y3C8 167 aa5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 F11RQ9Y624 299 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-213ENST00000476903 IGHV3-35A0A0C4DH35 117 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 OR2T8A6NH00 312 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 DIRC3C9JPN6 131 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 RGS5O15539 181 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 TGOLN2O43493 480 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 CD3DP04234 171 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 CD7P09564 240 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 LYL1P12980 280 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 PIGPP57054 158 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 TAS2R19P59542 299 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 RND3P61587 244 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 MAJINQ3KP22 176 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 ANKRD55Q3KP44 614 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 CASC10Q5T4H9 136 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms