RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 NMSQ5H8A3 153 aa14.35□□□□□ -0.11
PTCD3-210ENST00000473829 C11orf87Q6NUJ2 197 aa14.35□□□□□ -0.11
PTCD3-210ENST00000473829 PLET1Q6UQ28 207 aa14.35□□□□□ -0.11
PTCD3-210ENST00000473829 LYZL2Q7Z4W2 148 aa14.35□□□□□ -0.11
PTCD3-210ENST00000473829 UBAC2Q8NBM4 344 aa14.35□□□□□ -0.11
PTCD3-210ENST00000473829 CHRDL1Q9BU40 450 aa14.35□□□□□ -0.11
PTCD3-210ENST00000473829 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.35□□□□□ -0.11
PTCD3-210ENST00000473829 ZNF320A2RRD8 509 aa14.34□□□□□ -0.11
PTCD3-210ENST00000473829 NXPH3O95157 252 aa14.34□□□□□ -0.11
PTCD3-210ENST00000473829 MT-CO2P00403 227 aa14.34□□□□□ -0.11
PTCD3-210ENST00000473829 FOLR2P14207 255 aa14.34□□□□□ -0.11
PTCD3-210ENST00000473829 ADMP35318 185 aa14.34□□□□□ -0.11
PTCD3-210ENST00000473829 SPCS3P61009 180 aa14.34□□□□□ -0.11
PTCD3-210ENST00000473829 RBMS2Q15434 407 aaKnown RBP14.34□□□□□ -0.11
PTCD3-210ENST00000473829 CNPY1Q3B7I2 92 aa14.34□□□□□ -0.11
PTCD3-210ENST00000473829 TMEM128Q5BJH2 165 aa14.34□□□□□ -0.11
PTCD3-210ENST00000473829 PVRIGQ6DKI7 326 aa14.34□□□□□ -0.11
PTCD3-210ENST00000473829 PINX1Q96BK5 328 aaKnown RBP14.34□□□□□ -0.11
PTCD3-210ENST00000473829 BSCL2Q96G97 398 aaPredicted RBP14.34□□□□□ -0.11
PTCD3-210ENST00000473829 B9D2Q9BPU9 175 aa14.34□□□□□ -0.11
PTCD3-210ENST00000473829 ZNF436Q9C0F3 470 aaPredicted RBP14.34□□□□□ -0.11
PTCD3-210ENST00000473829 SELENOKQ9Y6D0 94 aa14.34□□□□□ -0.11
PTCD3-210ENST00000473829 A0A0B4J2A0 478 aa14.33□□□□□ -0.12
PTCD3-210ENST00000473829 VAMP1P23763 118 aa14.33□□□□□ -0.12
PTCD3-210ENST00000473829 PPP1R1AQ13522 171 aa14.33□□□□□ -0.12
PTCD3-210ENST00000473829 DCTN2Q13561 401 aaKnown RBP14.33□□□□□ -0.12
PTCD3-210ENST00000473829 BSXQ3C1V8 233 aa14.33□□□□□ -0.12
PTCD3-210ENST00000473829 ANKRD55Q3KP44 614 aa14.33□□□□□ -0.12
PTCD3-210ENST00000473829 FAM106AQ4KMX7 169 aa14.33□□□□□ -0.12
PTCD3-210ENST00000473829 Q56UQ5 140 aa14.33□□□□□ -0.12
PTCD3-210ENST00000473829 LGI3Q8N145 548 aa14.33□□□□□ -0.12
PTCD3-210ENST00000473829 OR52E5Q8NH55 327 aa14.33□□□□□ -0.12
PTCD3-210ENST00000473829 ATP6V0BQ99437 205 aa14.33□□□□□ -0.12
PTCD3-210ENST00000473829 SHPKQ9UHJ6 478 aa14.33□□□□□ -0.12
PTCD3-210ENST00000473829 NAP1L6A6NFF2 107 aa14.32□□□□□ -0.12
PTCD3-210ENST00000473829 NDUFB6O95139 128 aa14.32□□□□□ -0.12
PTCD3-210ENST00000473829 SULT1A3P0DMM9 295 aa14.32□□□□□ -0.12
PTCD3-210ENST00000473829 SULT1A4P0DMN0 295 aa14.32□□□□□ -0.12
PTCD3-210ENST00000473829 ANXA3P12429 323 aa14.32□□□□□ -0.12
PTCD3-210ENST00000473829 SNCAP37840 140 aa14.32□□□□□ -0.12
PTCD3-210ENST00000473829 SRPXP78539 464 aa14.32□□□□□ -0.12
PTCD3-210ENST00000473829 CD300EQ496F6 205 aaPredicted RBP14.32□□□□□ -0.12
PTCD3-210ENST00000473829 TM4SF20Q53R12 229 aa14.32□□□□□ -0.12
PTCD3-210ENST00000473829 CENPSQ8N2Z9 138 aa14.32□□□□□ -0.12
PTCD3-210ENST00000473829 ENY2Q9NPA8 101 aa14.32□□□□□ -0.12
PTCD3-210ENST00000473829 FLVCR2Q9UPI3 526 aa14.32□□□□□ -0.12
PTCD3-210ENST00000473829 SFT2D2O95562 160 aa14.31□□□□□ -0.12
PTCD3-210ENST00000473829 CTSGP08311 255 aa14.31□□□□□ -0.12
PTCD3-210ENST00000473829 CBLN1P23435 193 aa14.31□□□□□ -0.12
PTCD3-210ENST00000473829 CD69Q07108 199 aa14.31□□□□□ -0.12
PTCD3-210ENST00000473829 DEFB114Q30KQ6 69 aa14.31□□□□□ -0.12
PTCD3-210ENST00000473829 LCN12Q6JVE5 192 aa14.31□□□□□ -0.12
PTCD3-210ENST00000473829 SPSB3Q6PJ21 355 aa14.31□□□□□ -0.12
PTCD3-210ENST00000473829 Q8N1Y9 231 aa14.31□□□□□ -0.12
PTCD3-210ENST00000473829 DYNLRB2Q8TF09 96 aa14.31□□□□□ -0.12
PTCD3-210ENST00000473829 TMEM190Q8WZ59 177 aa14.31□□□□□ -0.12
PTCD3-210ENST00000473829 SMAD5-AS1Q9Y6J3 95 aa14.31□□□□□ -0.12
PTCD3-210ENST00000473829 PLA2G10O15496 165 aa14.3□□□□□ -0.12
PTCD3-210ENST00000473829 FCGR2BP31994 310 aaPredicted RBP14.3□□□□□ -0.12
PTCD3-210ENST00000473829 MFAP4P55083 255 aa14.3□□□□□ -0.12
PTCD3-210ENST00000473829 SMCO1Q147U7 214 aa14.3□□□□□ -0.12
PTCD3-210ENST00000473829 LRTM2Q8N967 370 aa14.3□□□□□ -0.12
PTCD3-210ENST00000473829 FNDC4Q9H6D8 234 aaPredicted RBP14.3□□□□□ -0.12
PTCD3-210ENST00000473829 MRPL36Q9P0J6 103 aaKnown RBP14.3□□□□□ -0.12
PTCD3-210ENST00000473829 MLXQ9UH92 298 aa14.3□□□□□ -0.12
PTCD3-210ENST00000473829 IGHV3OR16-8A0A075B7F1 116 aa14.29□□□□□ -0.12
PTCD3-210ENST00000473829 CEBPZOSA8MTT3 80 aa14.29□□□□□ -0.12
PTCD3-210ENST00000473829 MLANAQ16655 118 aa14.29□□□□□ -0.12
PTCD3-210ENST00000473829 UXS1Q8NBZ7 420 aa14.29□□□□□ -0.12
PTCD3-210ENST00000473829 OR2K2Q8NGT1 345 aa14.29□□□□□ -0.12
PTCD3-210ENST00000473829 TMEM170AQ8WVE7 144 aa14.29□□□□□ -0.12
PTCD3-210ENST00000473829 C7orf50Q9BRJ6 194 aaKnown RBP14.29□□□□□ -0.12
PTCD3-210ENST00000473829 HEYLQ9NQ87 328 aaPredicted RBP14.29□□□□□ -0.12
PTCD3-210ENST00000473829 HSPB7Q9UBY9 170 aa14.29□□□□□ -0.12
PTCD3-210ENST00000473829 DUXBA0A1W2PPF3 345 aa14.28□□□□□ -0.12
PTCD3-210ENST00000473829 ZNF785A8K8V0 405 aa14.28□□□□□ -0.12
PTCD3-210ENST00000473829 NDUFA4O00483 81 aa14.28□□□□□ -0.12
PTCD3-210ENST00000473829 TNFRSF9Q07011 255 aa14.28□□□□□ -0.12
PTCD3-210ENST00000473829 BTNL8Q6UX41 500 aa14.28□□□□□ -0.12
PTCD3-210ENST00000473829 TXN2Q99757 166 aa14.28□□□□□ -0.12
PTCD3-210ENST00000473829 PALMDQ9NP74 551 aa14.28□□□□□ -0.12
PTCD3-210ENST00000473829 UFC1Q9Y3C8 167 aa14.28□□□□□ -0.12
PTCD3-210ENST00000473829 CORTO00230 105 aa14.27□□□□□ -0.13
PTCD3-210ENST00000473829 C8orf88P0DMB2 117 aa14.27□□□□□ -0.13
PTCD3-210ENST00000473829 HTR2BP41595 481 aa14.27□□□□□ -0.13
PTCD3-210ENST00000473829 SUB1P53999 127 aaKnown RBP eCLIP14.27□□□□□ -0.13
PTCD3-210ENST00000473829 UBE2MP61081 183 aaKnown RBP14.27□□□□□ -0.13
PTCD3-210ENST00000473829 TMEM61Q8N0U2 210 aa14.27□□□□□ -0.13
PTCD3-210ENST00000473829 SLC24A4Q8NFF2 622 aa14.27□□□□□ -0.13
PTCD3-210ENST00000473829 WDR89Q96FK6 387 aaPredicted RBP14.27□□□□□ -0.13
PTCD3-210ENST00000473829 ASCL2Q99929 193 aa14.27□□□□□ -0.13
PTCD3-210ENST00000473829 RBKSQ9H477 322 aa14.27□□□□□ -0.13
PTCD3-210ENST00000473829 GAR1Q9NY12 217 aaKnown RBP14.27□□□□□ -0.13
PTCD3-210ENST00000473829 TECRQ9NZ01 308 aaKnown RBP14.27□□□□□ -0.13
PTCD3-210ENST00000473829 A0A1B0GU03 582 aa14.26□□□□□ -0.13
PTCD3-210ENST00000473829 C9orf170A2RU37 121 aa14.26□□□□□ -0.13
PTCD3-210ENST00000473829 CENPXA8MT69 81 aa14.26□□□□□ -0.13
PTCD3-210ENST00000473829 NUPL2O15504 423 aaKnown RBP14.26□□□□□ -0.13
PTCD3-210ENST00000473829 LYRM1O43325 122 aa14.26□□□□□ -0.13
PTCD3-210ENST00000473829 ZNF207O43670 478 aaKnown RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms