RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 GNG2P59768 71 aa13.12□□□□□ -0.31
SHH-205ENST00000472308 MISP3Q96FF7 219 aa13.12□□□□□ -0.31
SHH-205ENST00000472308 GRAMD2BQ96HH9 432 aa13.12□□□□□ -0.31
SHH-205ENST00000472308 SCRT2Q9NQ03 307 aa13.12□□□□□ -0.31
SHH-205ENST00000472308 MT-CO2P00403 227 aa13.11□□□□□ -0.31
SHH-205ENST00000472308 ACTL10Q5JWF8 245 aa13.11□□□□□ -0.31
SHH-205ENST00000472308 AADACL3Q5VUY0 350 aa13.11□□□□□ -0.31
SHH-205ENST00000472308 NPY1RP25929 384 aa13.1□□□□□ -0.31
SHH-205ENST00000472308 FXYD4P59646 89 aa13.1□□□□□ -0.31
SHH-205ENST00000472308 ARPC4P59998 168 aa13.1□□□□□ -0.31
SHH-205ENST00000472308 ERVK-16P61578 105 aa13.1□□□□□ -0.31
SHH-205ENST00000472308 RNF212Q495C1 297 aa13.1□□□□□ -0.31
SHH-205ENST00000472308 BEST4Q8NFU0 473 aa13.1□□□□□ -0.31
SHH-205ENST00000472308 STXBP6Q8NFX7 210 aa13.1□□□□□ -0.31
SHH-205ENST00000472308 DCANP1Q8TF63 244 aa13.1□□□□□ -0.31
SHH-205ENST00000472308 PUS1Q9Y606 427 aaKnown RBP eCLIP13.1□□□□□ -0.31
SHH-205ENST00000472308 A0A1B0GU03 582 aa13.09□□□□□ -0.31
SHH-205ENST00000472308 SMIM30A4D0T7 59 aa13.09□□□□□ -0.31
SHH-205ENST00000472308 GNG7O60262 68 aa13.09□□□□□ -0.31
SHH-205ENST00000472308 RAB3BP20337 219 aa13.09□□□□□ -0.31
SHH-205ENST00000472308 RCN1Q15293 331 aa13.09□□□□□ -0.31
SHH-205ENST00000472308 FAM210BQ96KR6 192 aa13.09□□□□□ -0.31
SHH-205ENST00000472308 TMEM56Q96MV1 263 aa13.09□□□□□ -0.31
SHH-205ENST00000472308 MGLLQ99685 303 aa13.09□□□□□ -0.31
SHH-205ENST00000472308 KRASP01116 189 aa13.08□□□□□ -0.32
SHH-205ENST00000472308 G6PCP35575 357 aa13.08□□□□□ -0.32
SHH-205ENST00000472308 TMEM17Q86X19 198 aa13.08□□□□□ -0.32
SHH-205ENST00000472308 CADM3Q8N126 398 aa13.08□□□□□ -0.32
SHH-205ENST00000472308 ZNF114Q8NC26 417 aa13.08□□□□□ -0.32
SHH-205ENST00000472308 FCAMRQ8WWV6 532 aa13.08□□□□□ -0.32
SHH-205ENST00000472308 DUSP21Q9H596 190 aa13.08□□□□□ -0.32
SHH-205ENST00000472308 SCN3BQ9NY72 215 aa13.08□□□□□ -0.32
SHH-205ENST00000472308 MYCBP2O75592 4640 aa13.08□□□□□ -0.32
SHH-205ENST00000472308 FAT1Q14517 4588 aa13.07□□□□□ -0.32
SHH-205ENST00000472308 GNRHRP30968 328 aa13.07□□□□□ -0.32
SHH-205ENST00000472308 ZNF600Q6ZNG1 722 aa13.07□□□□□ -0.32
SHH-205ENST00000472308 PRNDQ9UKY0 176 aa13.07□□□□□ -0.32
SHH-205ENST00000472308 CASQ2O14958 399 aaPredicted RBP13.06□□□□□ -0.32
SHH-205ENST00000472308 SNAPC5O75971 98 aa13.06□□□□□ -0.32
SHH-205ENST00000472308 RLN1P04808 185 aa13.06□□□□□ -0.32
SHH-205ENST00000472308 SPART-AS1P0CW21 52 aa13.06□□□□□ -0.32
SHH-205ENST00000472308 MYL9P24844 172 aa13.06□□□□□ -0.32
SHH-205ENST00000472308 F2RP25116 425 aa13.06□□□□□ -0.32
SHH-205ENST00000472308 ZNF367Q7RTV3 350 aa13.06□□□□□ -0.32
SHH-205ENST00000472308 HOGA1Q86XE5 327 aa13.06□□□□□ -0.32
SHH-205ENST00000472308 PINX1Q96BK5 328 aaKnown RBP13.06□□□□□ -0.32
SHH-205ENST00000472308 RAB40CQ96S21 281 aa13.06□□□□□ -0.32
SHH-205ENST00000472308 TMEM231Q9H6L2 316 aa13.06□□□□□ -0.32
SHH-205ENST00000472308 XCL2Q9UBD3 114 aa13.06□□□□□ -0.32
SHH-205ENST00000472308 FCER2P06734 321 aa13.05□□□□□ -0.32
SHH-205ENST00000472308 LPAR6P43657 344 aa13.05□□□□□ -0.32
SHH-205ENST00000472308 OGFRL1Q5TC84 451 aaPredicted RBP13.05□□□□□ -0.32
SHH-205ENST00000472308 ZNF705AQ6ZN79 300 aaPredicted RBP13.05□□□□□ -0.32
SHH-205ENST00000472308 CCDC90BQ9GZT6 254 aa13.05□□□□□ -0.32
SHH-205ENST00000472308 RGS10O43665 173 aa13.04□□□□□ -0.32
SHH-205ENST00000472308 PGLYRP1O75594 196 aaPredicted RBP13.04□□□□□ -0.32
SHH-205ENST00000472308 P2RY1P47900 373 aa13.04□□□□□ -0.32
SHH-205ENST00000472308 EMP1P54849 157 aa13.04□□□□□ -0.32
SHH-205ENST00000472308 FKBP11Q9NYL4 201 aa13.04□□□□□ -0.32
SHH-205ENST00000472308 ZNF705FA8MVS1 300 aaPredicted RBP13.03□□□□□ -0.32
SHH-205ENST00000472308 SCGNO76038 276 aa13.03□□□□□ -0.32
SHH-205ENST00000472308 ZNF705DP0CH99 300 aaPredicted RBP13.03□□□□□ -0.32
SHH-205ENST00000472308 ZNF705BP0CI00 300 aaPredicted RBP13.03□□□□□ -0.32
SHH-205ENST00000472308 NPPCP23582 126 aa13.03□□□□□ -0.32
SHH-205ENST00000472308 CRYBB3P26998 211 aa13.03□□□□□ -0.32
SHH-205ENST00000472308 PSMG4Q5JS54 123 aa13.03□□□□□ -0.32
SHH-205ENST00000472308 LGALS14Q8TCE9 139 aa13.03□□□□□ -0.32
SHH-205ENST00000472308 MOB3AQ96BX8 217 aa13.03□□□□□ -0.32
SHH-205ENST00000472308 NEU1Q99519 415 aa13.03□□□□□ -0.32
SHH-205ENST00000472308 C1QTNF4Q9BXJ3 329 aa13.03□□□□□ -0.32
SHH-205ENST00000472308 DKK2Q9UBU2 259 aa13.03□□□□□ -0.32
SHH-205ENST00000472308 TRDV1A0A1B0GX56 115 aa13.02□□□□□ -0.33
SHH-205ENST00000472308 A0A1W2PS18 150 aa13.02□□□□□ -0.33
SHH-205ENST00000472308 NPBWR1P48145 328 aa13.02□□□□□ -0.33
SHH-205ENST00000472308 PPP5CP53041 499 aa13.02□□□□□ -0.33
SHH-205ENST00000472308 C22orf42Q6IC83 251 aa13.02□□□□□ -0.33
SHH-205ENST00000472308 TPRA1Q86W33 373 aa13.02□□□□□ -0.33
SHH-205ENST00000472308 NDUFB11Q9NX14 153 aa13.02□□□□□ -0.33
SHH-205ENST00000472308 TPRKBQ9Y3C4 175 aa13.02□□□□□ -0.33
SHH-205ENST00000472308 NOTOA8MTQ0 251 aa13.01□□□□□ -0.33
SHH-205ENST00000472308 TMEM50AO95807 157 aa13.01□□□□□ -0.33
SHH-205ENST00000472308 HTN3P15516 51 aa13.01□□□□□ -0.33
SHH-205ENST00000472308 FGF9P31371 208 aaPredicted RBP13.01□□□□□ -0.33
SHH-205ENST00000472308 PRCDQ00LT1 54 aa13.01□□□□□ -0.33
SHH-205ENST00000472308 FAM222AQ5U5X8 452 aa13.01□□□□□ -0.33
SHH-205ENST00000472308 TMEM88Q6PEY1 159 aa13.01□□□□□ -0.33
SHH-205ENST00000472308 PRSS48Q7RTY5 328 aa13.01□□□□□ -0.33
SHH-205ENST00000472308 C6orf223Q8N319 242 aa13.01□□□□□ -0.33
SHH-205ENST00000472308 METTL26Q96S19 204 aa13.01□□□□□ -0.33
SHH-205ENST00000472308 TSC22D3Q99576 134 aa13.01□□□□□ -0.33
SHH-205ENST00000472308 RHBDL2Q9NX52 303 aa13.01□□□□□ -0.33
SHH-205ENST00000472308 MRPL36Q9P0J6 103 aaKnown RBP13.01□□□□□ -0.33
SHH-205ENST00000472308 TMEM189A5PLL7 270 aa13□□□□□ -0.33
SHH-205ENST00000472308 HELTA6NFD8 242 aa13□□□□□ -0.33
SHH-205ENST00000472308 H3BMM0 161 aa13□□□□□ -0.33
SHH-205ENST00000472308 HERV-K104P61576 105 aa13□□□□□ -0.33
SHH-205ENST00000472308 DHRS2Q13268 280 aa13□□□□□ -0.33
SHH-205ENST00000472308 OR5AP2Q8NGF4 316 aa13□□□□□ -0.33
SHH-205ENST00000472308 NIPSNAP3BQ9BS92 247 aa13□□□□□ -0.33
SHH-205ENST00000472308 YTHDF1Q9BYJ9 559 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms