RNA–Protein interactions for RNA: ENST00000467539.1

CGREF1-208, Transcript of cell growth regulator with EF-hand domain 1, human

TSL 4

Gene CGREF1, Length 548 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CGREF1-208	ENST00000467539	PLEKHA3	Q9HB20	300 aa		13.65	□□□□□ -0.22
CGREF1-208	ENST00000467539	IFNA17	P01571	189 aa		13.64	□□□□□ -0.23
CGREF1-208	ENST00000467539		Q56UQ5	140 aa		13.64	□□□□□ -0.23
CGREF1-208	ENST00000467539	FAM219A	Q8IW50	185 aa		13.64	□□□□□ -0.23
CGREF1-208	ENST00000467539	TMEM61	Q8N0U2	210 aa		13.64	□□□□□ -0.23
CGREF1-208	ENST00000467539	TMEM190	Q8WZ59	177 aa		13.64	□□□□□ -0.23
CGREF1-208	ENST00000467539	MISP3	Q96FF7	219 aa		13.64	□□□□□ -0.23
CGREF1-208	ENST00000467539	NAA60	Q9H7X0	242 aa		13.64	□□□□□ -0.23
CGREF1-208	ENST00000467539	SCP2D1	Q9UJQ7	156 aa		13.64	□□□□□ -0.23
CGREF1-208	ENST00000467539		A0A0G2JRQ6	117 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	CRYM-AS1	A6NIL9	109 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	OR11H12	B2RN74	326 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	MT-CO2	P00403	227 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	OR5AC1	P0C628	307 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	SNCA	P37840	140 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	ETV6	P41212	452 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	ANKRD55	Q3KP44	614 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	PVRIG	Q6DKI7	326 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539		Q6ZRM9	215 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	SELENOH	Q8IZQ5	122 aa	Known RBP	13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	UBAC2	Q8NBM4	344 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	SCGB3A2	Q96PL1	93 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	KCNIP3	Q9Y2W7	256 aa		13.63	□□□□□ -0.23
CGREF1-208	ENST00000467539	AARD	Q4LEZ3	155 aa		13.62	□□□□□ -0.23
CGREF1-208	ENST00000467539	SPINK9	Q5DT21	86 aa		13.62	□□□□□ -0.23
CGREF1-208	ENST00000467539	BTNL8	Q6UX41	500 aa		13.62	□□□□□ -0.23
CGREF1-208	ENST00000467539	RBPMS2	Q6ZRY4	209 aa	Known RBP	13.62	□□□□□ -0.23
CGREF1-208	ENST00000467539	DEFB125	Q8N687	156 aa		13.62	□□□□□ -0.23
CGREF1-208	ENST00000467539	RBPMS	Q93062	196 aa	Known RBP	13.62	□□□□□ -0.23
CGREF1-208	ENST00000467539	PDCD10	Q9BUL8	212 aa		13.62	□□□□□ -0.23
CGREF1-208	ENST00000467539	DAZ1	Q9NQZ3	744 aa	Known RBP	13.62	□□□□□ -0.23
CGREF1-208	ENST00000467539	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	13.62	□□□□□ -0.23
CGREF1-208	ENST00000467539	SELENOK	Q9Y6D0	94 aa		13.62	□□□□□ -0.23
CGREF1-208	ENST00000467539	TMEM56-RWDD3	S4R434	201 aa		13.62	□□□□□ -0.23
CGREF1-208	ENST00000467539	NBEAL2	Q6ZNJ1	2754 aa		13.61	□□□□□ -0.23
CGREF1-208	ENST00000467539	CCDC160	A6NGH7	325 aa		13.61	□□□□□ -0.23
CGREF1-208	ENST00000467539	C15orf62	A8K5M9	175 aa		13.61	□□□□□ -0.23
CGREF1-208	ENST00000467539	C3orf84	H3BNL1	204 aa		13.61	□□□□□ -0.23
CGREF1-208	ENST00000467539	NUPL2	O15504	423 aa	Known RBP	13.61	□□□□□ -0.23
CGREF1-208	ENST00000467539	SUB1	P53999	127 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
CGREF1-208	ENST00000467539	REL	Q04864	619 aa	Predicted RBP	13.61	□□□□□ -0.23
CGREF1-208	ENST00000467539	SLC16A13	Q7RTY0	426 aa		13.61	□□□□□ -0.23
CGREF1-208	ENST00000467539	SLC35G3	Q8N808	338 aa		13.61	□□□□□ -0.23
CGREF1-208	ENST00000467539	OR52E5	Q8NH55	327 aa		13.61	□□□□□ -0.23
CGREF1-208	ENST00000467539	LHFPL5	Q8TAF8	219 aa		13.61	□□□□□ -0.23
CGREF1-208	ENST00000467539	ZNF414	Q96IQ9	312 aa		13.61	□□□□□ -0.23
CGREF1-208	ENST00000467539	ZNF701	M0R085	212 aa	Predicted RBP	13.6	□□□□□ -0.23
CGREF1-208	ENST00000467539	SCAF4	O95104	1147 aa	Known RBP	13.6	□□□□□ -0.23
CGREF1-208	ENST00000467539	SPCS3	P61009	180 aa		13.6	□□□□□ -0.23
CGREF1-208	ENST00000467539	OR52B4	Q8NGK2	314 aa		13.6	□□□□□ -0.23
CGREF1-208	ENST00000467539	RNASE11	Q8TAA1	199 aa	Known RBP	13.6	□□□□□ -0.23
CGREF1-208	ENST00000467539	PINX1	Q96BK5	328 aa	Known RBP	13.6	□□□□□ -0.23
CGREF1-208	ENST00000467539	GPR146	Q96CH1	333 aa		13.6	□□□□□ -0.23
CGREF1-208	ENST00000467539	GALNT14	Q96FL9	552 aa		13.6	□□□□□ -0.23
CGREF1-208	ENST00000467539	CITED4	Q96RK1	184 aa		13.6	□□□□□ -0.23
CGREF1-208	ENST00000467539	SPATA25	Q9BR10	227 aa		13.6	□□□□□ -0.23
CGREF1-208	ENST00000467539	RBM38	Q9H0Z9	239 aa	Known RBP	13.6	□□□□□ -0.23
CGREF1-208	ENST00000467539	RBMY1B	A6NDE4	496 aa	Known RBP	13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	RBMY1E	A6NEQ0	496 aa	Known RBP	13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	IGHV3-48	P01763	117 aa		13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	RBMY1D	P0C7P1	496 aa	Known RBP	13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	RNASE2	P10153	161 aa	Known RBP	13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	NPBWR1	P48145	328 aa		13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	LAMTOR1	Q6IAA8	161 aa		13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	DUSP18	Q8NEJ0	188 aa		13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	OR10C1	Q96KK4	312 aa		13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	C20orf24	Q9BUV8	137 aa		13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	ENY2	Q9NPA8	101 aa		13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	MCUB	Q9NWR8	336 aa		13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	SMPX	Q9UHP9	88 aa		13.59	□□□□□ -0.23
CGREF1-208	ENST00000467539	CORT	O00230	105 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539	TSPAN4	O14817	238 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539	GNG7	O60262	68 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539	S100A5	P33763	92 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539	TMEM187	Q14656	261 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539	BSX	Q3C1V8	233 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539	PYDC2	Q56P42	97 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539	TMEM268	Q5VZI3	342 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539	IL22RA2	Q969J5	263 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539	TMEM230	Q96A57	120 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539	SRD5A3	Q9H8P0	318 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539		V9GYH0	126 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539	DNAH7	Q8WXX0	4024 aa		13.58	□□□□□ -0.24
CGREF1-208	ENST00000467539	TMEM50A	O95807	157 aa		13.57	□□□□□ -0.24
CGREF1-208	ENST00000467539	FAU	P35544	74 aa	Known RBP	13.57	□□□□□ -0.24
CGREF1-208	ENST00000467539	HOXA1	P49639	335 aa	Predicted RBP	13.57	□□□□□ -0.24
CGREF1-208	ENST00000467539	AP3S2	P59780	193 aa		13.57	□□□□□ -0.24
CGREF1-208	ENST00000467539	KLF9	Q13886	244 aa	Predicted RBP	13.57	□□□□□ -0.24
CGREF1-208	ENST00000467539	CCDC190	Q86UF4	302 aa		13.57	□□□□□ -0.24
CGREF1-208	ENST00000467539	MUC7	Q8TAX7	377 aa		13.57	□□□□□ -0.24
CGREF1-208	ENST00000467539	SPAG8	Q99932	426 aa	Predicted RBP	13.57	□□□□□ -0.24
CGREF1-208	ENST00000467539	WFDC10A	Q9H1F0	79 aa		13.57	□□□□□ -0.24
CGREF1-208	ENST00000467539	HIPK2	Q9H2X6	1198 aa		13.57	□□□□□ -0.24
CGREF1-208	ENST00000467539	CACFD1	Q9UGQ2	172 aa		13.57	□□□□□ -0.24
CGREF1-208	ENST00000467539	IGHV3OR16-8	A0A075B7F1	116 aa		13.56	□□□□□ -0.24
CGREF1-208	ENST00000467539	ZNF207	O43670	478 aa	Known RBP	13.56	□□□□□ -0.24
CGREF1-208	ENST00000467539	YIF1A	O95070	293 aa		13.56	□□□□□ -0.24
CGREF1-208	ENST00000467539	AKR1C4	P17516	323 aa		13.56	□□□□□ -0.24
CGREF1-208	ENST00000467539	SUPT4H1	P63272	117 aa	Known RBP	13.56	□□□□□ -0.24
CGREF1-208	ENST00000467539	TOMM5	Q8N4H5	51 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms