RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 GP9P14770 177 aa9.92□□□□□ -0.82
COL28A1-206ENST00000465339 SNCAP37840 140 aa9.92□□□□□ -0.82
COL28A1-206ENST00000465339 TMEM187Q14656 261 aa9.92□□□□□ -0.82
COL28A1-206ENST00000465339 AARDQ4LEZ3 155 aa9.92□□□□□ -0.82
COL28A1-206ENST00000465339 TMEM268Q5VZI3 342 aa9.92□□□□□ -0.82
COL28A1-206ENST00000465339 PLET1Q6UQ28 207 aa9.92□□□□□ -0.82
COL28A1-206ENST00000465339 LHFPL5Q8TAF8 219 aa9.92□□□□□ -0.82
COL28A1-206ENST00000465339 SCARB1Q8WTV0 552 aa9.92□□□□□ -0.82
COL28A1-206ENST00000465339 GAR1Q9NY12 217 aaKnown RBP9.92□□□□□ -0.82
COL28A1-206ENST00000465339 C21orf62Q9NYP8 219 aa9.92□□□□□ -0.82
COL28A1-206ENST00000465339 A0A0G2JRQ6 117 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 NAP1L6A6NFF2 107 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 FAM229AH3BQW9 127 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 K7EIM0 57 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 GPR183P32249 361 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 SUB1P53999 127 aaKnown RBP eCLIP9.91□□□□□ -0.82
COL28A1-206ENST00000465339 SPCS3P61009 180 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 SRPXP78539 464 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 TMEM128Q5BJH2 165 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 TRIQKQ629K1 86 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 LCN12Q6JVE5 192 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 SPSB3Q6PJ21 355 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 Q6ZRM9 215 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 OR2K2Q8NGT1 345 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 OR52E5Q8NH55 327 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 BSCL2Q96G97 398 aaPredicted RBP9.91□□□□□ -0.82
COL28A1-206ENST00000465339 B9D2Q9BPU9 175 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 PALMDQ9NP74 551 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 ENY2Q9NPA8 101 aa9.91□□□□□ -0.82
COL28A1-206ENST00000465339 ZNF320A2RRD8 509 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 C2orf70A6NJV1 201 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 TGOLN2O43493 480 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 MFAP4P55083 255 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 SUPT4H1P63272 117 aaKnown RBP9.9□□□□□ -0.82
COL28A1-206ENST00000465339 CD69Q07108 199 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 BAK1Q16611 211 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 SPINK9Q5DT21 86 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 TMED4Q7Z7H5 227 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 HAPLN4Q86UW8 402 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 LGI3Q8N145 548 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 GPR146Q96CH1 333 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 MISP3Q96FF7 219 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 TXN2Q99757 166 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 TECRQ9NZ01 308 aaKnown RBP9.9□□□□□ -0.82
COL28A1-206ENST00000465339 SMAD5-AS1Q9Y6J3 95 aa9.9□□□□□ -0.82
COL28A1-206ENST00000465339 IGHV3-21A0A0B4J1V1 117 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 A0A0B4J2A0 478 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 OR2T8A6NH00 312 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 CENPXA8MT69 81 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 A8MWP6 167 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 I3L2K1 104 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 CORTO00230 105 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 FOLR2P14207 255 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 CBLN1P23435 193 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 FCGR2BP31994 310 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-206ENST00000465339 HOXA1P49639 335 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-206ENST00000465339 ELLP55199 621 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-206ENST00000465339 ADAMTSL5Q6ZMM2 481 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 LINC00299Q6ZSB3 139 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 ZNF436Q9C0F3 470 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-206ENST00000465339 ZC4H2Q9NQZ6 224 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 CACNG5Q9UF02 275 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 SHPKQ9UHJ6 478 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 UFC1Q9Y3C8 167 aa9.89□□□□□ -0.83
COL28A1-206ENST00000465339 DUXBA0A1W2PPF3 345 aa9.88□□□□□ -0.83
COL28A1-206ENST00000465339 MT-CO2P00403 227 aa9.88□□□□□ -0.83
COL28A1-206ENST00000465339 SULT1A3P0DMM9 295 aa9.88□□□□□ -0.83
COL28A1-206ENST00000465339 SULT1A4P0DMN0 295 aa9.88□□□□□ -0.83
COL28A1-206ENST00000465339 CCR6P51684 374 aa9.88□□□□□ -0.83
COL28A1-206ENST00000465339 RBMS2Q15434 407 aaKnown RBP9.88□□□□□ -0.83
COL28A1-206ENST00000465339 DEFB114Q30KQ6 69 aa9.88□□□□□ -0.83
COL28A1-206ENST00000465339 Q56UQ5 140 aa9.88□□□□□ -0.83
COL28A1-206ENST00000465339 PVRIGQ6DKI7 326 aa9.88□□□□□ -0.83
COL28A1-206ENST00000465339 CENPSQ8N2Z9 138 aa9.88□□□□□ -0.83
COL28A1-206ENST00000465339 UBAC2Q8NBM4 344 aa9.88□□□□□ -0.83
COL28A1-206ENST00000465339 DYNLRB2Q8TF09 96 aa9.88□□□□□ -0.83
COL28A1-206ENST00000465339 MARC2Q969Z3 335 aa9.88□□□□□ -0.83
COL28A1-206ENST00000465339 SDHCQ99643 169 aaPredicted RBP9.88□□□□□ -0.83
COL28A1-206ENST00000465339 C7orf50Q9BRJ6 194 aaKnown RBP9.88□□□□□ -0.83
COL28A1-206ENST00000465339 TMEM213A2RRL7 107 aa9.87□□□□□ -0.83
COL28A1-206ENST00000465339 F8W735 103 aaPredicted RBP9.87□□□□□ -0.83
COL28A1-206ENST00000465339 NDUFA4O00483 81 aa9.87□□□□□ -0.83
COL28A1-206ENST00000465339 NUPL2O15504 423 aaKnown RBP9.87□□□□□ -0.83
COL28A1-206ENST00000465339 CTSGP08311 255 aa9.87□□□□□ -0.83
COL28A1-206ENST00000465339 NHLRC4P0CG21 123 aaPredicted RBP9.87□□□□□ -0.83
COL28A1-206ENST00000465339 RNASE2P10153 161 aaKnown RBP9.87□□□□□ -0.83
COL28A1-206ENST00000465339 IL7P13232 177 aa9.87□□□□□ -0.83
COL28A1-206ENST00000465339 HTR2BP41595 481 aa9.87□□□□□ -0.83
COL28A1-206ENST00000465339 UBE2MP61081 183 aaKnown RBP9.87□□□□□ -0.83
COL28A1-206ENST00000465339 SMCO1Q147U7 214 aa9.87□□□□□ -0.83
COL28A1-206ENST00000465339 NMSQ5H8A3 153 aa9.87□□□□□ -0.83
COL28A1-206ENST00000465339 LYZL2Q7Z4W2 148 aa9.87□□□□□ -0.83
COL28A1-206ENST00000465339 DUSP18Q8NEJ0 188 aa9.87□□□□□ -0.83
COL28A1-206ENST00000465339 PINX1Q96BK5 328 aaKnown RBP9.87□□□□□ -0.83
COL28A1-206ENST00000465339 HEYLQ9NQ87 328 aaPredicted RBP9.87□□□□□ -0.83
COL28A1-206ENST00000465339 PRR13Q9NZ81 148 aa9.87□□□□□ -0.83
COL28A1-206ENST00000465339 MRPL27Q9P0M9 148 aaKnown RBP9.87□□□□□ -0.83
COL28A1-206ENST00000465339 IGHV3-35A0A0C4DH35 117 aa9.86□□□□□ -0.83
COL28A1-206ENST00000465339 A0A1B0GU03 582 aa9.86□□□□□ -0.83
COL28A1-206ENST00000465339 CEBPZOSA8MTT3 80 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms