RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 RANGRFQ9HD47 186 aaPredicted RBP13.62□□□□□ -0.23
COL7A1-205ENST00000465238 PEF1Q9UBV8 284 aaKnown RBP13.62□□□□□ -0.23
COL7A1-205ENST00000465238 IGHV4OR15-8A0A075B7B6 117 aa13.61□□□□□ -0.23
COL7A1-205ENST00000465238 A0A087WW49 117 aa13.61□□□□□ -0.23
COL7A1-205ENST00000465238 FAM209BQ5JX69 171 aa13.61□□□□□ -0.23
COL7A1-205ENST00000465238 OR1P1Q8NH06 330 aa13.61□□□□□ -0.23
COL7A1-205ENST00000465238 EEF1AKMT3Q96AZ1 226 aa13.61□□□□□ -0.23
COL7A1-205ENST00000465238 CXorf58Q96LI9 332 aa13.61□□□□□ -0.23
COL7A1-205ENST00000465238 ZNF256Q9Y2P7 627 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-205ENST00000465238 U3KQK5 164 aa13.61□□□□□ -0.23
COL7A1-205ENST00000465238 CEBPZOSA8MTT3 80 aa13.6□□□□□ -0.23
COL7A1-205ENST00000465238 INS-IGF2F8WCM5 200 aa13.6□□□□□ -0.23
COL7A1-205ENST00000465238 IFNA21P01568 189 aa13.6□□□□□ -0.23
COL7A1-205ENST00000465238 SLC25A6P12236 298 aa13.6□□□□□ -0.23
COL7A1-205ENST00000465238 SUB1P53999 127 aaKnown RBP eCLIP13.6□□□□□ -0.23
COL7A1-205ENST00000465238 GGNBP1Q5YKI7 109 aa13.6□□□□□ -0.23
COL7A1-205ENST00000465238 NRARPQ7Z6K4 114 aa13.6□□□□□ -0.23
COL7A1-205ENST00000465238 OR52B4Q8NGK2 314 aa13.6□□□□□ -0.23
COL7A1-205ENST00000465238 HEYLQ9NQ87 328 aaPredicted RBP13.6□□□□□ -0.23
COL7A1-205ENST00000465238 DMRT1Q9Y5R6 373 aa13.6□□□□□ -0.23
COL7A1-205ENST00000465238 NXPH3O95157 252 aa13.59□□□□□ -0.23
COL7A1-205ENST00000465238 ZP3P21754 424 aa13.59□□□□□ -0.23
COL7A1-205ENST00000465238 SLURP1P55000 103 aa13.59□□□□□ -0.23
COL7A1-205ENST00000465238 MFAP2P55001 183 aa13.59□□□□□ -0.23
COL7A1-205ENST00000465238 ZNF114Q8NC26 417 aa13.59□□□□□ -0.23
COL7A1-205ENST00000465238 DUSP18Q8NEJ0 188 aa13.59□□□□□ -0.23
COL7A1-205ENST00000465238 MITD1Q8WV92 249 aa13.59□□□□□ -0.23
COL7A1-205ENST00000465238 S4R3C0 116 aa13.59□□□□□ -0.23
COL7A1-205ENST00000465238 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.58□□□□□ -0.24
COL7A1-205ENST00000465238 TRBV7-1A0A0A6YYK4 115 aa13.58□□□□□ -0.24
COL7A1-205ENST00000465238 ADAP1O75689 374 aa13.58□□□□□ -0.24
COL7A1-205ENST00000465238 IGHV3-23P01764 117 aa13.58□□□□□ -0.24
COL7A1-205ENST00000465238 TNFRSF9Q07011 255 aa13.58□□□□□ -0.24
COL7A1-205ENST00000465238 PLET1Q6UQ28 207 aa13.58□□□□□ -0.24
COL7A1-205ENST00000465238 VN1R17PQ8TDU5 208 aa13.58□□□□□ -0.24
COL7A1-205ENST00000465238 ZNF431Q8TF32 576 aaPredicted RBP13.58□□□□□ -0.24
COL7A1-205ENST00000465238 MISP3Q96FF7 219 aa13.58□□□□□ -0.24
COL7A1-205ENST00000465238 SEC22CQ9BRL7 303 aa13.58□□□□□ -0.24
COL7A1-205ENST00000465238 HIPK2Q9H2X6 1198 aa13.58□□□□□ -0.24
COL7A1-205ENST00000465238 HSPB7Q9UBY9 170 aa13.58□□□□□ -0.24
COL7A1-205ENST00000465238 RYR3Q15413 4870 aa13.57□□□□□ -0.24
COL7A1-205ENST00000465238 MFSD2BA6NFX1 497 aa13.57□□□□□ -0.24
COL7A1-205ENST00000465238 TRBV12-3P01733 135 aa13.57□□□□□ -0.24
COL7A1-205ENST00000465238 CLEC19AQ6UXS0 136 aa13.57□□□□□ -0.24
COL7A1-205ENST00000465238 UXS1Q8NBZ7 420 aa13.57□□□□□ -0.24
COL7A1-205ENST00000465238 DCUN1D4Q92564 292 aa13.57□□□□□ -0.24
COL7A1-205ENST00000465238 IGHV3-21A0A0B4J1V1 117 aa13.56□□□□□ -0.24
COL7A1-205ENST00000465238 OVOL1O14753 267 aa13.56□□□□□ -0.24
COL7A1-205ENST00000465238 PITX3O75364 302 aa13.56□□□□□ -0.24
COL7A1-205ENST00000465238 IL5P05113 134 aa13.56□□□□□ -0.24
COL7A1-205ENST00000465238 RNASE2P10153 161 aaKnown RBP13.56□□□□□ -0.24
COL7A1-205ENST00000465238 HTR2BP41595 481 aa13.56□□□□□ -0.24
COL7A1-205ENST00000465238 TATDN3Q17R31 274 aa13.56□□□□□ -0.24
COL7A1-205ENST00000465238 RPEL1Q2QD12 228 aa13.56□□□□□ -0.24
COL7A1-205ENST00000465238 C12orf45Q8N5I9 185 aaPredicted RBP13.56□□□□□ -0.24
COL7A1-205ENST00000465238 DLX4Q92988 240 aaPredicted RBP13.56□□□□□ -0.24
COL7A1-205ENST00000465238 RBKSQ9H477 322 aa13.56□□□□□ -0.24
COL7A1-205ENST00000465238 FAM90A26D6RGX4 464 aa13.55□□□□□ -0.24
COL7A1-205ENST00000465238 INMT-MINDY4F8WBC2 141 aa13.55□□□□□ -0.24
COL7A1-205ENST00000465238 MED6O75586 246 aa13.55□□□□□ -0.24
COL7A1-205ENST00000465238 LY86O95711 162 aa13.55□□□□□ -0.24
COL7A1-205ENST00000465238 CLEC3BP05452 202 aa13.55□□□□□ -0.24
COL7A1-205ENST00000465238 ARL3P36405 182 aa13.55□□□□□ -0.24
COL7A1-205ENST00000465238 ZNF502Q8TBZ5 544 aa13.55□□□□□ -0.24
COL7A1-205ENST00000465238 DTD1Q8TEA8 209 aa13.55□□□□□ -0.24
COL7A1-205ENST00000465238 SCARB1Q8WTV0 552 aa13.55□□□□□ -0.24
COL7A1-205ENST00000465238 PINX1Q96BK5 328 aaKnown RBP13.55□□□□□ -0.24
COL7A1-205ENST00000465238 CCDC140Q96MF4 163 aa13.55□□□□□ -0.24
COL7A1-205ENST00000465238 GPN1Q9HCN4 374 aaPredicted RBP13.55□□□□□ -0.24
COL7A1-205ENST00000465238 C21orf62Q9NYP8 219 aa13.55□□□□□ -0.24
COL7A1-205ENST00000465238 SMAD5-AS1Q9Y6J3 95 aa13.55□□□□□ -0.24
COL7A1-205ENST00000465238 PPP5D1E7EU14 171 aa13.54□□□□□ -0.24
COL7A1-205ENST00000465238 K7EIM0 57 aa13.54□□□□□ -0.24
COL7A1-205ENST00000465238 CORTO00230 105 aa13.54□□□□□ -0.24
COL7A1-205ENST00000465238 BMPR1BO00238 502 aa13.54□□□□□ -0.24
COL7A1-205ENST00000465238 GGCTO75223 188 aaKnown RBP13.54□□□□□ -0.24
COL7A1-205ENST00000465238 NOXA1Q86UR1 476 aa13.54□□□□□ -0.24
COL7A1-205ENST00000465238 ASCL2Q99929 193 aa13.54□□□□□ -0.24
COL7A1-205ENST00000465238 I3L2K1 104 aa13.53□□□□□ -0.24
COL7A1-205ENST00000465238 PRAF2O60831 178 aa13.53□□□□□ -0.24
COL7A1-205ENST00000465238 MT-CO2P00403 227 aa13.53□□□□□ -0.24
COL7A1-205ENST00000465238 IFNA10P01566 189 aa13.53□□□□□ -0.24
COL7A1-205ENST00000465238 GPR183P32249 361 aa13.53□□□□□ -0.24
COL7A1-205ENST00000465238 KLF5Q13887 457 aaPredicted RBP13.53□□□□□ -0.24
COL7A1-205ENST00000465238 IAH1Q2TAA2 248 aaPredicted RBP13.53□□□□□ -0.24
COL7A1-205ENST00000465238 BSXQ3C1V8 233 aa13.53□□□□□ -0.24
COL7A1-205ENST00000465238 C2orf83Q53S99 150 aa13.53□□□□□ -0.24
COL7A1-205ENST00000465238 Q56UQ5 140 aa13.53□□□□□ -0.24
COL7A1-205ENST00000465238 SLC24A4Q8NFF2 622 aa13.53□□□□□ -0.24
COL7A1-205ENST00000465238 MARVELD1Q9BSK0 173 aa13.53□□□□□ -0.24
COL7A1-205ENST00000465238 PALMDQ9NP74 551 aa13.53□□□□□ -0.24
COL7A1-205ENST00000465238 U3KQ87 197 aa13.53□□□□□ -0.24
COL7A1-205ENST00000465238 MPTX1A8MV57 137 aa13.52□□□□□ -0.25
COL7A1-205ENST00000465238 SAP30O75446 220 aa13.52□□□□□ -0.25
COL7A1-205ENST00000465238 OR2C1O95371 312 aa13.52□□□□□ -0.25
COL7A1-205ENST00000465238 MFAP4P55083 255 aa13.52□□□□□ -0.25
COL7A1-205ENST00000465238 SYNJ2BPP57105 145 aa13.52□□□□□ -0.25
COL7A1-205ENST00000465238 PVRIGQ6DKI7 326 aa13.52□□□□□ -0.25
COL7A1-205ENST00000465238 UBAC2Q8NBM4 344 aa13.52□□□□□ -0.25
COL7A1-205ENST00000465238 ATP6V0BQ99437 205 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms