RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 PPDPFQ9H3Y8 114 aa1.54□□□□□ -2.16
USP40-211ENST00000464956 RIMS4Q9H426 269 aaPredicted RBP1.54□□□□□ -2.16
USP40-211ENST00000464956 MGAT4AQ9UM21 535 aa1.54□□□□□ -2.16
USP40-211ENST00000464956 SNX12Q9UMY4 172 aa1.54□□□□□ -2.16
USP40-211ENST00000464956 HHLA3Q9XRX5 114 aa1.54□□□□□ -2.16
USP40-211ENST00000464956 NSG2Q9Y328 171 aa1.54□□□□□ -2.16
USP40-211ENST00000464956 RAP2CQ9Y3L5 183 aa1.54□□□□□ -2.16
USP40-211ENST00000464956 GMPPBQ9Y5P6 360 aa1.54□□□□□ -2.16
USP40-211ENST00000464956 TRAV12-2A0A075B6T6 113 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 TRBV4-1A0A0J9YWV2 114 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 A0A0J9YX75 114 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 IGLC7A0M8Q6 106 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 TMEM235A6NFC5 223 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 TRPC5OSA6NMA1 111 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 H7BYZ3 331 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 K7EIM0 57 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 RAB27BO00194 218 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 UBDO15205 165 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 CRXO43186 299 aaPredicted RBP1.53□□□□□ -2.16
USP40-211ENST00000464956 SCGB2A1O75556 95 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 RPP14O95059 124 aaKnown RBP1.53□□□□□ -2.16
USP40-211ENST00000464956 BPNT1O95861 308 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 IFNA7P01567 189 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 GLAP06280 429 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 ABHD2P08910 425 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 SEC11BP0C7V7 166 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 UBCP0CG48 685 aaKnown RBP1.53□□□□□ -2.16
USP40-211ENST00000464956 GTF2F2P13984 249 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 HLA-GP17693 338 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 SERPINA2P20848 420 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 ATP6V1B2P21281 511 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 PAFAH1B1P43034 410 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 PSMB3P49720 205 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 HCCSP53701 268 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 PSME3P61289 254 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 RPL8P62917 257 aaKnown RBP1.53□□□□□ -2.16
USP40-211ENST00000464956 ZNF85Q03923 595 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 TSPAN31Q12999 210 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 GAMTQ14353 236 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 HMGN3Q15651 99 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 MAJINQ3KP22 176 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 PAGE3Q5JUK9 113 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 RAB12Q6IQ22 244 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 ERICH5Q6P6B1 374 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 Q6ZTI0 123 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 LINC00173Q6ZV60 143 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 HSD17B13Q7Z5P4 300 aaPredicted RBP1.53□□□□□ -2.16
USP40-211ENST00000464956 ZBTB34Q8NCN2 500 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 OR2T33Q8NG76 320 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 OR6M1Q8NGM8 313 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 OR10AC1Q8NH08 325 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 GNPDA2Q8TDQ7 276 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 FGGYQ96C11 551 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 C16orf92Q96LL3 132 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 S100A13Q99584 98 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 KCTD14Q9BQ13 255 aaPredicted RBP1.53□□□□□ -2.16
USP40-211ENST00000464956 TTTY10Q9BZA0 68 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 METTL9Q9H1A3 318 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 ZFAND3Q9H8U3 227 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 FUT9Q9Y231 359 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 PEX16Q9Y5Y5 336 aa1.53□□□□□ -2.16
USP40-211ENST00000464956 MUC12Q9UKN1 5478 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 TRGV1A0A0A0MS02 117 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.52□□□□□ -2.17
USP40-211ENST00000464956 TRGV4A0A0C4DH28 118 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 UBE2QL1A1L167 161 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 USP17L23D6RBM5 183 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 F6UB75 175 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 SC5DO75845 299 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 DUSP14O95147 198 aaKnown RBP1.52□□□□□ -2.17
USP40-211ENST00000464956 IGHV3-53P01767 116 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 SERPINE2P07093 398 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 SMIM18P0DKX4 95 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 CT45A10P0DMU9 189 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 OR13C7P0DN81 318 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 ZNF182P17025 639 aaPredicted RBP1.52□□□□□ -2.17
USP40-211ENST00000464956 NPBWR1P48145 328 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 MRPL19P49406 292 aaKnown RBP1.52□□□□□ -2.17
USP40-211ENST00000464956 MNAT1P51948 309 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 SMIM11AP58511 58 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 CDK5Q00535 292 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 DAZ2Q13117 558 aaKnown RBP1.52□□□□□ -2.17
USP40-211ENST00000464956 GPR176Q14439 515 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 ACSM3Q53FZ2 586 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 SPINK9Q5DT21 86 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 TNFAIP8L3Q5GJ75 292 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 SLC35D3Q5M8T2 416 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 THOC7Q6I9Y2 204 aaKnown RBP1.52□□□□□ -2.17
USP40-211ENST00000464956 ZNF322Q6U7Q0 402 aaPredicted RBP1.52□□□□□ -2.17
USP40-211ENST00000464956 C16orf54Q6UWD8 224 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 AMTNQ6UX39 209 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 SIGLEC15Q6ZMC9 328 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 VTCN1Q7Z7D3 282 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 VKORC1L1Q8N0U8 176 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 STPG4Q8N801 248 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 NHLRC2Q8NBF2 726 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 OR11H7Q8NGC8 314 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 OR51A2Q8NGJ7 313 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 MRPL30Q8TCC3 161 aaKnown RBP1.52□□□□□ -2.17
USP40-211ENST00000464956 MZB1Q8WU39 189 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms