RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SPINK9Q5DT21 86 aa11.81□□□□□ -0.52
COL7A1-204ENST00000462475 H2BFWTQ7Z2G1 175 aa11.81□□□□□ -0.52
COL7A1-204ENST00000462475 GATAD1Q8WUU5 269 aa11.81□□□□□ -0.52
COL7A1-204ENST00000462475 PINX1Q96BK5 328 aaKnown RBP11.81□□□□□ -0.52
COL7A1-204ENST00000462475 YIPF6Q96EC8 236 aa11.81□□□□□ -0.52
COL7A1-204ENST00000462475 TXN2Q99757 166 aa11.81□□□□□ -0.52
COL7A1-204ENST00000462475 RARRES2Q99969 163 aa11.81□□□□□ -0.52
COL7A1-204ENST00000462475 MRPS26Q9BYN8 205 aaKnown RBP11.81□□□□□ -0.52
COL7A1-204ENST00000462475 DNAH6Q9C0G6 4158 aa11.81□□□□□ -0.52
COL7A1-204ENST00000462475 GNG7O60262 68 aa11.8□□□□□ -0.52
COL7A1-204ENST00000462475 APOHP02749 345 aaPredicted RBP11.8□□□□□ -0.52
COL7A1-204ENST00000462475 SMIM18P0DKX4 95 aa11.8□□□□□ -0.52
COL7A1-204ENST00000462475 S100GP29377 79 aa11.8□□□□□ -0.52
COL7A1-204ENST00000462475 TSPAN5P62079 268 aa11.8□□□□□ -0.52
COL7A1-204ENST00000462475 IZUMO4Q1ZYL8 232 aa11.8□□□□□ -0.52
COL7A1-204ENST00000462475 TOMM20LQ6UXN7 152 aa11.8□□□□□ -0.52
COL7A1-204ENST00000462475 TCF24Q7RTU0 167 aa11.8□□□□□ -0.52
COL7A1-204ENST00000462475 ST8SIA2Q92186 375 aa11.8□□□□□ -0.52
COL7A1-204ENST00000462475 CMTM3Q96MX0 182 aa11.8□□□□□ -0.52
COL7A1-204ENST00000462475 CA1P00915 261 aaPredicted RBP11.79□□□□□ -0.52
COL7A1-204ENST00000462475 CMC4P56277 68 aaPredicted RBP11.79□□□□□ -0.52
COL7A1-204ENST00000462475 HSPE1P61604 102 aaKnown RBP11.79□□□□□ -0.52
COL7A1-204ENST00000462475 LGALS9CQ6DKI2 356 aa11.79□□□□□ -0.52
COL7A1-204ENST00000462475 LPCAT3Q6P1A2 487 aa11.79□□□□□ -0.52
COL7A1-204ENST00000462475 SNX29P2Q8IUI4 249 aa11.79□□□□□ -0.52
COL7A1-204ENST00000462475 LILRB2Q8N423 598 aa11.79□□□□□ -0.52
COL7A1-204ENST00000462475 OR11H2Q8NH07 326 aa11.79□□□□□ -0.52
COL7A1-204ENST00000462475 C11orf68Q9H3H3 251 aaKnown RBP11.79□□□□□ -0.52
COL7A1-204ENST00000462475 VSIRQ9H7M9 311 aa11.79□□□□□ -0.52
COL7A1-204ENST00000462475 FBXL17Q9UF56 701 aa11.79□□□□□ -0.52
COL7A1-204ENST00000462475 A0A087WXM4 84 aa11.78□□□□□ -0.52
COL7A1-204ENST00000462475 IGHV3-66A0A0C4DH42 116 aa11.78□□□□□ -0.52
COL7A1-204ENST00000462475 RCVRNP35243 200 aa11.78□□□□□ -0.52
COL7A1-204ENST00000462475 FAM24BQ8N5W8 94 aa11.78□□□□□ -0.52
COL7A1-204ENST00000462475 C11orf45Q8TAV5 145 aa11.78□□□□□ -0.52
COL7A1-204ENST00000462475 GINS3Q9BRX5 216 aa11.78□□□□□ -0.52
COL7A1-204ENST00000462475 ZFAND3Q9H8U3 227 aa11.78□□□□□ -0.52
COL7A1-204ENST00000462475 SCPEP1Q9HB40 452 aa11.78□□□□□ -0.52
COL7A1-204ENST00000462475 COMMD3Q9UBI1 195 aa11.78□□□□□ -0.52
COL7A1-204ENST00000462475 A6NHS1 94 aa11.77□□□□□ -0.53
COL7A1-204ENST00000462475 M0QYG6 137 aa11.77□□□□□ -0.53
COL7A1-204ENST00000462475 DEFB4AO15263 64 aa11.77□□□□□ -0.53
COL7A1-204ENST00000462475 ST8SIA3O43173 380 aa11.77□□□□□ -0.53
COL7A1-204ENST00000462475 IGKV1-5P01602 117 aa11.77□□□□□ -0.53
COL7A1-204ENST00000462475 UCP3P55916 312 aa11.77□□□□□ -0.53
COL7A1-204ENST00000462475 DEFB131AP59861 70 aa11.77□□□□□ -0.53
COL7A1-204ENST00000462475 PAFAH1B2P68402 229 aa11.77□□□□□ -0.53
COL7A1-204ENST00000462475 ERHP84090 104 aaKnown RBP11.77□□□□□ -0.53
COL7A1-204ENST00000462475 RBMS2Q15434 407 aaKnown RBP11.77□□□□□ -0.53
COL7A1-204ENST00000462475 LEMD1Q68G75 181 aa11.77□□□□□ -0.53
COL7A1-204ENST00000462475 KRTAP17-1Q9BYP8 105 aa11.77□□□□□ -0.53
COL7A1-204ENST00000462475 MS4A6AQ9H2W1 248 aa11.77□□□□□ -0.53
COL7A1-204ENST00000462475 PUS1Q9Y606 427 aaKnown RBP eCLIP11.77□□□□□ -0.53
COL7A1-204ENST00000462475 A0A1B0GU03 582 aa11.76□□□□□ -0.53
COL7A1-204ENST00000462475 DFFBO76075 338 aa11.76□□□□□ -0.53
COL7A1-204ENST00000462475 APOA1P02647 267 aa11.76□□□□□ -0.53
COL7A1-204ENST00000462475 PI3P19957 117 aa11.76□□□□□ -0.53
COL7A1-204ENST00000462475 NPBWR1P48145 328 aa11.76□□□□□ -0.53
COL7A1-204ENST00000462475 NCS1P62166 190 aa11.76□□□□□ -0.53
COL7A1-204ENST00000462475 ZNF600Q6ZNG1 722 aa11.76□□□□□ -0.53
COL7A1-204ENST00000462475 MFFQ9GZY8 342 aa11.76□□□□□ -0.53
COL7A1-204ENST00000462475 A0A0B4J293 547 aa11.75□□□□□ -0.53
COL7A1-204ENST00000462475 DNASE2O00115 360 aaPredicted RBP11.75□□□□□ -0.53
COL7A1-204ENST00000462475 CD5P06127 495 aa11.75□□□□□ -0.53
COL7A1-204ENST00000462475 P0C879 139 aa11.75□□□□□ -0.53
COL7A1-204ENST00000462475 RPL5P46777 297 aaKnown RBP11.75□□□□□ -0.53
COL7A1-204ENST00000462475 TMEM187Q14656 261 aa11.75□□□□□ -0.53
COL7A1-204ENST00000462475 RNASE12Q5GAN4 147 aaKnown RBP11.75□□□□□ -0.53
COL7A1-204ENST00000462475 SLC35G3Q8N808 338 aa11.75□□□□□ -0.53
COL7A1-204ENST00000462475 DUSP18Q8NEJ0 188 aa11.75□□□□□ -0.53
COL7A1-204ENST00000462475 TP53RKQ96S44 253 aa11.75□□□□□ -0.53
COL7A1-204ENST00000462475 MRPL36Q9P0J6 103 aaKnown RBP11.75□□□□□ -0.53
COL7A1-204ENST00000462475 TRAV2A0A0B4J234 112 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 SMIM31A0A1B0GVY4 71 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 HPGDSO60760 199 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 IFNA4P05014 189 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 PGAM2P15259 253 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 ELK1P19419 428 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 SNCAP37840 140 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 AKR1C2P52895 323 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 RND3P61587 244 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 RPL11P62913 178 aaKnown RBP11.74□□□□□ -0.53
COL7A1-204ENST00000462475 PRR20EP86478 221 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 PRR20CP86479 221 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 PRR20DP86480 221 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 PRR20BP86481 221 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 PRR20AP86496 221 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 PVRIGQ6DKI7 326 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 VCX3AQ9NNX9 186 aa11.74□□□□□ -0.53
COL7A1-204ENST00000462475 INS-IGF2F8WCM5 200 aa11.73□□□□□ -0.53
COL7A1-204ENST00000462475 TMEM50AO95807 157 aa11.73□□□□□ -0.53
COL7A1-204ENST00000462475 RNASE2P10153 161 aaKnown RBP11.73□□□□□ -0.53
COL7A1-204ENST00000462475 PIGPP57054 158 aa11.73□□□□□ -0.53
COL7A1-204ENST00000462475 VBP1P61758 197 aa11.73□□□□□ -0.53
COL7A1-204ENST00000462475 LHFPL1Q86WI0 220 aa11.73□□□□□ -0.53
COL7A1-204ENST00000462475 Q8NAQ8 132 aa11.73□□□□□ -0.53
COL7A1-204ENST00000462475 NDUFA13Q9P0J0 144 aa11.73□□□□□ -0.53
COL7A1-204ENST00000462475 RABAC1Q9UI14 185 aa11.73□□□□□ -0.53
COL7A1-204ENST00000462475 IFNA17P01571 189 aa11.72□□□□□ -0.53
COL7A1-204ENST00000462475 GIG44P09565 113 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms