RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 RHPN1-AS1Q9BWJ2 59 aa16.88■□□□□ 0.29
PTPN4-207ENST00000460162 EXTL2Q9UBQ6 330 aa16.88■□□□□ 0.29
PTPN4-207ENST00000460162 MTFP1Q9UDX5 166 aa16.88■□□□□ 0.29
PTPN4-207ENST00000460162 INS-IGF2F8WCM5 200 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 ATG12O94817 140 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 YIF1AO95070 293 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 IGKV1-5P01602 117 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 CD3DP04234 171 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 P0C879 139 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 TNFRSF9Q07011 255 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 STPG3Q8N7X2 389 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 OR52I2Q8NH67 350 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 C15orf40Q8WUR7 153 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 GALNT14Q96FL9 552 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 TP53RKQ96S44 253 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 NAA50Q9GZZ1 169 aaKnown RBP16.87■□□□□ 0.29
PTPN4-207ENST00000460162 BIRC6Q9NR09 4857 aa16.87■□□□□ 0.29
PTPN4-207ENST00000460162 SMIM18P0DKX4 95 aa16.86■□□□□ 0.29
PTPN4-207ENST00000460162 PI3P19957 117 aa16.86■□□□□ 0.29
PTPN4-207ENST00000460162 PPP5CP53041 499 aa16.86■□□□□ 0.29
PTPN4-207ENST00000460162 LYG2Q86SG7 212 aa16.86■□□□□ 0.29
PTPN4-207ENST00000460162 SLC35G3Q8N808 338 aa16.86■□□□□ 0.29
PTPN4-207ENST00000460162 GINS3Q9BRX5 216 aa16.86■□□□□ 0.29
PTPN4-207ENST00000460162 C6orf62Q9GZU0 229 aaPredicted RBP16.86■□□□□ 0.29
PTPN4-207ENST00000460162 A0A0J9YWU9 116 aa16.85■□□□□ 0.29
PTPN4-207ENST00000460162 C3orf85A0A1B0GTC6 90 aa16.85■□□□□ 0.29
PTPN4-207ENST00000460162 CMC4P56277 68 aaPredicted RBP16.85■□□□□ 0.29
PTPN4-207ENST00000460162 IZUMO4Q1ZYL8 232 aa16.85■□□□□ 0.29
PTPN4-207ENST00000460162 CCDC71LQ8N9Z2 235 aa16.85■□□□□ 0.29
PTPN4-207ENST00000460162 RNF183Q96D59 192 aa16.85■□□□□ 0.29
PTPN4-207ENST00000460162 PDCD10Q9BUL8 212 aa16.85■□□□□ 0.29
PTPN4-207ENST00000460162 TRAV14DV4A0A0A6YYC5 116 aa16.84■□□□□ 0.29
PTPN4-207ENST00000460162 CORTO00230 105 aa16.84■□□□□ 0.29
PTPN4-207ENST00000460162 IGHV3-48P01763 117 aa16.84■□□□□ 0.29
PTPN4-207ENST00000460162 CD74P04233 296 aa16.84■□□□□ 0.29
PTPN4-207ENST00000460162 CD5P06127 495 aa16.84■□□□□ 0.29
PTPN4-207ENST00000460162 ATF4P18848 351 aaPredicted RBP16.84■□□□□ 0.29
PTPN4-207ENST00000460162 SNCAP37840 140 aa16.84■□□□□ 0.29
PTPN4-207ENST00000460162 NPBWR1P48145 328 aa16.84■□□□□ 0.29
PTPN4-207ENST00000460162 SPINK9Q5DT21 86 aa16.84■□□□□ 0.29
PTPN4-207ENST00000460162 DUSP18Q8NEJ0 188 aa16.84■□□□□ 0.29
PTPN4-207ENST00000460162 ZFAND1Q8TCF1 268 aa16.84■□□□□ 0.29
PTPN4-207ENST00000460162 MAP6D1Q9H9H5 199 aa16.84■□□□□ 0.29
PTPN4-207ENST00000460162 COPZ2Q9P299 210 aa16.84■□□□□ 0.29
PTPN4-207ENST00000460162 IGHV3-49A0A0A0MS15 119 aa16.83■□□□□ 0.28
PTPN4-207ENST00000460162 A0A0B4J293 547 aa16.83■□□□□ 0.28
PTPN4-207ENST00000460162 CXorf65A6NEN9 183 aa16.83■□□□□ 0.28
PTPN4-207ENST00000460162 NUPR2A6NF83 97 aa16.83■□□□□ 0.28
PTPN4-207ENST00000460162 ST8SIA3O43173 380 aa16.83■□□□□ 0.28
PTPN4-207ENST00000460162 B3GALNT1O75752 331 aa16.83■□□□□ 0.28
PTPN4-207ENST00000460162 RPL35AP18077 110 aaKnown RBP16.83■□□□□ 0.28
PTPN4-207ENST00000460162 TAS2R19P59542 299 aa16.83■□□□□ 0.28
PTPN4-207ENST00000460162 TRIM16LQ309B1 348 aa16.83■□□□□ 0.28
PTPN4-207ENST00000460162 FAM90A2PQ658T7 463 aa16.83■□□□□ 0.28
PTPN4-207ENST00000460162 TMEM229BQ8NBD8 167 aa16.83■□□□□ 0.28
PTPN4-207ENST00000460162 ABHD1Q96SE0 405 aa16.83■□□□□ 0.28
PTPN4-207ENST00000460162 IFNA17P01571 189 aa16.82■□□□□ 0.28
PTPN4-207ENST00000460162 UCP1P25874 307 aa16.82■□□□□ 0.28
PTPN4-207ENST00000460162 PMS2P11Q13670 270 aa16.82■□□□□ 0.28
PTPN4-207ENST00000460162 GPR107Q5VW38 600 aa16.82■□□□□ 0.28
PTPN4-207ENST00000460162 PVRIGQ6DKI7 326 aa16.82■□□□□ 0.28
PTPN4-207ENST00000460162 ZNF600Q6ZNG1 722 aa16.82■□□□□ 0.28
PTPN4-207ENST00000460162 OR4D10Q8NGI6 311 aa16.82■□□□□ 0.28
PTPN4-207ENST00000460162 OR13C8Q8NGS7 320 aa16.82■□□□□ 0.28
PTPN4-207ENST00000460162 TERB2Q8NHR7 220 aa16.82■□□□□ 0.28
PTPN4-207ENST00000460162 HOXA1P49639 335 aaPredicted RBP16.81■□□□□ 0.28
PTPN4-207ENST00000460162 SUB1P53999 127 aaKnown RBP eCLIP16.81■□□□□ 0.28
PTPN4-207ENST00000460162 MRPS10P82664 201 aaKnown RBP16.81■□□□□ 0.28
PTPN4-207ENST00000460162 SSBP1Q04837 148 aaKnown RBP16.81■□□□□ 0.28
PTPN4-207ENST00000460162 SCGB2B2Q4G0G5 96 aa16.81■□□□□ 0.28
PTPN4-207ENST00000460162 TOMM20LQ6UXN7 152 aa16.81■□□□□ 0.28
PTPN4-207ENST00000460162 APRG1Q8IVJ8 170 aa16.81■□□□□ 0.28
PTPN4-207ENST00000460162 TMEM217Q8N7C4 229 aa16.81■□□□□ 0.28
PTPN4-207ENST00000460162 LINC00476Q8WZB0 136 aa16.81■□□□□ 0.28
PTPN4-207ENST00000460162 RRNAD1Q96FB5 475 aaKnown RBP16.81■□□□□ 0.28
PTPN4-207ENST00000460162 VSIRQ9H7M9 311 aa16.81■□□□□ 0.28
PTPN4-207ENST00000460162 ZFAND3Q9H8U3 227 aa16.81■□□□□ 0.28
PTPN4-207ENST00000460162 IGHV3OR16-13A0A075B7E8 117 aa16.8■□□□□ 0.28
PTPN4-207ENST00000460162 IGHV3-74A0A0B4J1X5 117 aa16.8■□□□□ 0.28
PTPN4-207ENST00000460162 GABARAPH6UMI1 98 aa16.8■□□□□ 0.28
PTPN4-207ENST00000460162 RAB3DO95716 219 aa16.8■□□□□ 0.28
PTPN4-207ENST00000460162 RNASE2P10153 161 aaKnown RBP16.8■□□□□ 0.28
PTPN4-207ENST00000460162 TFPI2P48307 235 aa16.8■□□□□ 0.28
PTPN4-207ENST00000460162 PAFAH1B2P68402 229 aa16.8■□□□□ 0.28
PTPN4-207ENST00000460162 EWSR1Q01844 656 aaKnown RBP eCLIP16.8■□□□□ 0.28
PTPN4-207ENST00000460162 STEAP1BQ6NZ63 245 aa16.8■□□□□ 0.28
PTPN4-207ENST00000460162 TCF24Q7RTU0 167 aa16.8■□□□□ 0.28
PTPN4-207ENST00000460162 RNASE11Q8TAA1 199 aaKnown RBP16.8■□□□□ 0.28
PTPN4-207ENST00000460162 IGKV3-7A0A075B6H7 116 aa16.79■□□□□ 0.28
PTPN4-207ENST00000460162 SP6Q3SY56 376 aa16.79■□□□□ 0.28
PTPN4-207ENST00000460162 MARCH1Q8TCQ1 289 aa16.79■□□□□ 0.28
PTPN4-207ENST00000460162 ST8SIA2Q92186 375 aa16.79■□□□□ 0.28
PTPN4-207ENST00000460162 MIXL1Q9H2W2 232 aa16.79■□□□□ 0.28
PTPN4-207ENST00000460162 ENY2Q9NPA8 101 aa16.79■□□□□ 0.28
PTPN4-207ENST00000460162 PUS1Q9Y606 427 aaKnown RBP eCLIP16.79■□□□□ 0.28
PTPN4-207ENST00000460162 A0A0G2JRQ6 117 aa16.78■□□□□ 0.28
PTPN4-207ENST00000460162 SCGB2A1O75556 95 aa16.78■□□□□ 0.28
PTPN4-207ENST00000460162 MEF2DQ14814 521 aa16.78■□□□□ 0.28
PTPN4-207ENST00000460162 ZNF124Q15973 351 aa16.78■□□□□ 0.28
PTPN4-207ENST00000460162 FAM219AQ8IW50 185 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms