RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 SGPP2Q8IWX5 399 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 OR11H7Q8NGC8 314 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 FAM110DQ8TAY7 271 aaPredicted RBP8.32□□□□□ -1.08
USP39-210ENST00000459775 ZNF431Q8TF32 576 aaPredicted RBP8.32□□□□□ -1.08
USP39-210ENST00000459775 SMIM8Q96KF7 97 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 SCGB3A2Q96PL1 93 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 ZNF436Q9C0F3 470 aaPredicted RBP8.32□□□□□ -1.08
USP39-210ENST00000459775 TRAV40A0A0B4J280 105 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 PPP1R2P9O14990 202 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 CCL25O15444 150 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 PDE6DO43924 150 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 IGKV1-39P01597 117 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 RBP4P02753 201 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 IGKV1D-39P04432 117 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 IL5P05113 134 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 F2RP25116 425 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 CD34P28906 385 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 DUTP33316 252 aaKnown RBP8.32□□□□□ -1.08
USP39-210ENST00000459775 ECI1P42126 302 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 TMEM187Q14656 261 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 PSG5Q15238 335 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 KLF17Q5JT82 389 aaPredicted RBP8.32□□□□□ -1.08
USP39-210ENST00000459775 KIR3DL3Q8N743 410 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 RITA1Q96K30 269 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 OR5B12Q96R08 314 aa8.32□□□□□ -1.08
USP39-210ENST00000459775 RANGRFQ9HD47 186 aaPredicted RBP8.32□□□□□ -1.08
USP39-210ENST00000459775 MXRA5Q9NR99 2828 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 TGIF2-C20orf24A0A0A6YYL0 155 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 IGSF23A1L1A6 192 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 CREBL2O60519 120 aaPredicted RBP8.31□□□□□ -1.08
USP39-210ENST00000459775 FCGR3BO75015 233 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 TMEM50AO95807 157 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 HOXB5P09067 269 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 KCNIP4Q6PIL6 250 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 IL17RELQ6ZVW7 336 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 LYZL2Q7Z4W2 148 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 VKORC1L1Q8N0U8 176 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 OR11H6Q8NGC7 330 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 PINX1Q96BK5 328 aaKnown RBP8.31□□□□□ -1.08
USP39-210ENST00000459775 AJUBAQ96IF1 538 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 HEXA-AS1Q9H8Q6 139 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 FOXA2Q9Y261 457 aaPredicted RBP8.31□□□□□ -1.08
USP39-210ENST00000459775 UFC1Q9Y3C8 167 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 ABCA1O95477 2261 aa8.31□□□□□ -1.08
USP39-210ENST00000459775 SH2D7A6NKC9 451 aaPredicted RBP8.3□□□□□ -1.08
USP39-210ENST00000459775 ODF3BA8MYP8 253 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 LY6LH3BQJ8 138 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 S1PR2O95136 353 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 IGKV1-16P04430 117 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 IL6RP08887 468 aaPredicted RBP8.3□□□□□ -1.08
USP39-210ENST00000459775 SAA4P35542 130 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 TAS2R31P59538 309 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 RAP2BP61225 183 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 KHDC1LQ5JSQ8 128 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 SIGLEC15Q6ZMC9 328 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 ZNF833PQ6ZTB9 187 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 UBAC2Q8NBM4 344 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 CHIAQ9BZP6 476 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 PIPOXQ9P0Z9 390 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 VPREB3Q9UKI3 123 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 A0A0G2JRQ6 117 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 NBR2O15453 112 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 PRAF2O60831 178 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 DUS4LO95620 317 aaKnown RBP8.3□□□□□ -1.08
USP39-210ENST00000459775 TOMM40O96008 361 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 LPAR6P43657 344 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 RND3P61587 244 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 KRTAP1-1Q07627 177 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 TMEM30BQ3MIR4 351 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 C6orf226Q5I0X4 101 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 LY6G6FQ5SQ64 297 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 TMEM268Q5VZI3 342 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 LINC00311Q8N616 119 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 ZNF738Q8NE65 137 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 SEC22AQ96IW7 307 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 TMEM222Q9H0R3 208 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 MED28Q9H204 178 aa8.3□□□□□ -1.08
USP39-210ENST00000459775 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.29□□□□□ -1.082e-7■■■■■ 31.3
USP39-210ENST00000459775 SNRPGP15A8MWD9 76 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 SNAPC5O75971 98 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 HOXA5P20719 270 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 HTR1DP28221 377 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 H2BFSP57053 126 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 CXorf66Q5JRM2 361 aaPredicted RBP8.29□□□□□ -1.08
USP39-210ENST00000459775 MOB3BQ86TA1 216 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 BCL6BQ8N143 479 aaPredicted RBP8.29□□□□□ -1.08
USP39-210ENST00000459775 SLC35G3Q8N808 338 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 DDB2Q92466 427 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 GALNT14Q96FL9 552 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 S1PR3Q99500 378 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 NABP2Q9BQ15 211 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 HEYLQ9NQ87 328 aaPredicted RBP8.29□□□□□ -1.08
USP39-210ENST00000459775 NIPBLQ6KC79 2804 aaeCLIP8.29□□□□□ -1.085e-6■■■■■ 32.2
USP39-210ENST00000459775 IGHV1-3A0A0C4DH29 117 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 MDFIC2A0A1B0GVS7 189 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 CRLF1O75462 422 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 NXPH3O95157 252 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 KRASP01116 189 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 PMCHP20382 165 aa8.29□□□□□ -1.08
USP39-210ENST00000459775 G6PCP35575 357 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms