RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 IZUMO4Q1ZYL8 232 aa12.15□□□□□ -0.46
COL7A1-203ENST00000459756 TMEM190Q8WZ59 177 aa12.15□□□□□ -0.46
COL7A1-203ENST00000459756 RRNAD1Q96FB5 475 aaKnown RBP12.15□□□□□ -0.46
COL7A1-203ENST00000459756 WDR89Q96FK6 387 aaPredicted RBP12.15□□□□□ -0.46
COL7A1-203ENST00000459756 NEURL2Q9BR09 285 aa12.15□□□□□ -0.46
COL7A1-203ENST00000459756 RTBDNQ9BSG5 229 aaPredicted RBP12.15□□□□□ -0.46
COL7A1-203ENST00000459756 TMEM222Q9H0R3 208 aa12.15□□□□□ -0.46
COL7A1-203ENST00000459756 MRPL27Q9P0M9 148 aaKnown RBP12.15□□□□□ -0.46
COL7A1-203ENST00000459756 MLXQ9UH92 298 aa12.15□□□□□ -0.46
COL7A1-203ENST00000459756 TEX13DA0A0J9YY54 714 aaPredicted RBP12.14□□□□□ -0.47
COL7A1-203ENST00000459756 F8W735 103 aaPredicted RBP12.14□□□□□ -0.47
COL7A1-203ENST00000459756 INS-IGF2F8WCM5 200 aa12.14□□□□□ -0.47
COL7A1-203ENST00000459756 NDUFA4O00483 81 aa12.14□□□□□ -0.47
COL7A1-203ENST00000459756 IFNA17P01571 189 aa12.14□□□□□ -0.47
COL7A1-203ENST00000459756 Q56UQ5 140 aa12.14□□□□□ -0.47
COL7A1-203ENST00000459756 TMEM61Q8N0U2 210 aa12.14□□□□□ -0.47
COL7A1-203ENST00000459756 SLC35G3Q8N808 338 aa12.14□□□□□ -0.47
COL7A1-203ENST00000459756 UBAC2Q8NBM4 344 aa12.14□□□□□ -0.47
COL7A1-203ENST00000459756 RNASE11Q8TAA1 199 aaKnown RBP12.14□□□□□ -0.47
COL7A1-203ENST00000459756 S100ZQ8WXG8 99 aa12.14□□□□□ -0.47
COL7A1-203ENST00000459756 MISP3Q96FF7 219 aa12.14□□□□□ -0.47
COL7A1-203ENST00000459756 PDCD10Q9BUL8 212 aa12.14□□□□□ -0.47
COL7A1-203ENST00000459756 C5orf66Q9H5L9 145 aa12.14□□□□□ -0.47
COL7A1-203ENST00000459756 NAA60Q9H7X0 242 aa12.14□□□□□ -0.47
COL7A1-203ENST00000459756 I3L2K1 104 aa12.13□□□□□ -0.47
COL7A1-203ENST00000459756 ST8SIA3O43173 380 aa12.13□□□□□ -0.47
COL7A1-203ENST00000459756 CDS2O95674 445 aa12.13□□□□□ -0.47
COL7A1-203ENST00000459756 OR5AC1P0C628 307 aa12.13□□□□□ -0.47
COL7A1-203ENST00000459756 FCGR2BP31994 310 aaPredicted RBP12.13□□□□□ -0.47
COL7A1-203ENST00000459756 SNCAP37840 140 aa12.13□□□□□ -0.47
COL7A1-203ENST00000459756 DHODHQ02127 395 aa12.13□□□□□ -0.47
COL7A1-203ENST00000459756 BTNL8Q6UX41 500 aa12.13□□□□□ -0.47
COL7A1-203ENST00000459756 SLC16A13Q7RTY0 426 aa12.13□□□□□ -0.47
COL7A1-203ENST00000459756 FAM219AQ8IW50 185 aa12.13□□□□□ -0.47
COL7A1-203ENST00000459756 TXN2Q99757 166 aa12.13□□□□□ -0.47
COL7A1-203ENST00000459756 CHRDL1Q9BU40 450 aa12.13□□□□□ -0.47
COL7A1-203ENST00000459756 DAZ1Q9NQZ3 744 aaKnown RBP12.13□□□□□ -0.47
COL7A1-203ENST00000459756 GPR132Q9UNW8 380 aa12.13□□□□□ -0.47
COL7A1-203ENST00000459756 TRAV25A0A0B4J276 109 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 CRYM-AS1A6NIL9 109 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 MT-CO2P00403 227 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 CTSGP08311 255 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 CD7P09564 240 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 ADMP35318 185 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 CCR6P51684 374 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 MFAP4P55083 255 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 RELQ04864 619 aaPredicted RBP12.12□□□□□ -0.47
COL7A1-203ENST00000459756 HAGHQ16775 308 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 ANKRD55Q3KP44 614 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 SPINK9Q5DT21 86 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 TMED4Q7Z7H5 227 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 GLYATL2Q8WU03 294 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 RBPMSQ93062 196 aaKnown RBP12.12□□□□□ -0.47
COL7A1-203ENST00000459756 SCGB3A2Q96PL1 93 aa12.12□□□□□ -0.47
COL7A1-203ENST00000459756 OR11H12B2RN74 326 aa12.11□□□□□ -0.47
COL7A1-203ENST00000459756 K7EMT4 169 aa12.11□□□□□ -0.47
COL7A1-203ENST00000459756 NUPL2O15504 423 aaKnown RBP12.11□□□□□ -0.47
COL7A1-203ENST00000459756 SUB1P53999 127 aaKnown RBP eCLIP12.11□□□□□ -0.47
COL7A1-203ENST00000459756 ZNF846Q147U1 533 aa12.11□□□□□ -0.47
COL7A1-203ENST00000459756 AARDQ4LEZ3 155 aa12.11□□□□□ -0.47
COL7A1-203ENST00000459756 RBPMS2Q6ZRY4 209 aaKnown RBP12.11□□□□□ -0.47
COL7A1-203ENST00000459756 LINC00299Q6ZSB3 139 aa12.11□□□□□ -0.47
COL7A1-203ENST00000459756 SPATA25Q9BR10 227 aa12.11□□□□□ -0.47
COL7A1-203ENST00000459756 C20orf24Q9BUV8 137 aa12.11□□□□□ -0.47
COL7A1-203ENST00000459756 WDR12Q9GZL7 423 aaKnown RBP12.11□□□□□ -0.47
COL7A1-203ENST00000459756 SELENOKQ9Y6D0 94 aa12.11□□□□□ -0.47
COL7A1-203ENST00000459756 A0A0G2JRQ6 117 aa12.1□□□□□ -0.47
COL7A1-203ENST00000459756 C15orf62A8K5M9 175 aa12.1□□□□□ -0.47
COL7A1-203ENST00000459756 CENPXA8MT69 81 aa12.1□□□□□ -0.47
COL7A1-203ENST00000459756 SCAF4O95104 1147 aaKnown RBP12.1□□□□□ -0.47
COL7A1-203ENST00000459756 AKR1C4P17516 323 aa12.1□□□□□ -0.47
COL7A1-203ENST00000459756 HOXA1P49639 335 aaPredicted RBP12.1□□□□□ -0.47
COL7A1-203ENST00000459756 PVRIGQ6DKI7 326 aa12.1□□□□□ -0.47
COL7A1-203ENST00000459756 LINC00322Q6ZN03 302 aaPredicted RBP12.1□□□□□ -0.47
COL7A1-203ENST00000459756 SELENOHQ8IZQ5 122 aaKnown RBP12.1□□□□□ -0.47
COL7A1-203ENST00000459756 DEFB125Q8N687 156 aa12.1□□□□□ -0.47
COL7A1-203ENST00000459756 OR52B4Q8NGK2 314 aa12.1□□□□□ -0.47
COL7A1-203ENST00000459756 LHFPL5Q8TAF8 219 aa12.1□□□□□ -0.47
COL7A1-203ENST00000459756 PINX1Q96BK5 328 aaKnown RBP12.1□□□□□ -0.47
COL7A1-203ENST00000459756 CCDC32Q9BV29 185 aa12.1□□□□□ -0.47
COL7A1-203ENST00000459756 ENY2Q9NPA8 101 aa12.1□□□□□ -0.47
COL7A1-203ENST00000459756 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.1□□□□□ -0.47
COL7A1-203ENST00000459756 TMEM56-RWDD3S4R434 201 aa12.1□□□□□ -0.47
COL7A1-203ENST00000459756 NAP1L6A6NFF2 107 aa12.09□□□□□ -0.47
COL7A1-203ENST00000459756 C3orf84H3BNL1 204 aa12.09□□□□□ -0.47
COL7A1-203ENST00000459756 CORTO00230 105 aa12.09□□□□□ -0.47
COL7A1-203ENST00000459756 SPCS3P61009 180 aa12.09□□□□□ -0.47
COL7A1-203ENST00000459756 TMEM268Q5VZI3 342 aa12.09□□□□□ -0.47
COL7A1-203ENST00000459756 Q6ZRM9 215 aa12.09□□□□□ -0.47
COL7A1-203ENST00000459756 OR52E5Q8NH55 327 aa12.09□□□□□ -0.47
COL7A1-203ENST00000459756 DEDD2Q8WXF8 326 aa12.09□□□□□ -0.47
COL7A1-203ENST00000459756 GALNT14Q96FL9 552 aa12.09□□□□□ -0.47
COL7A1-203ENST00000459756 SPAG8Q99932 426 aaPredicted RBP12.09□□□□□ -0.47
COL7A1-203ENST00000459756 KCNIP3Q9Y2W7 256 aa12.09□□□□□ -0.47
COL7A1-203ENST00000459756 NBEAL2Q6ZNJ1 2754 aa12.08□□□□□ -0.48
COL7A1-203ENST00000459756 GNG7O60262 68 aa12.08□□□□□ -0.48
COL7A1-203ENST00000459756 IGHV3-48P01763 117 aa12.08□□□□□ -0.48
COL7A1-203ENST00000459756 RNASE2P10153 161 aaKnown RBP12.08□□□□□ -0.48
COL7A1-203ENST00000459756 NPBWR1P48145 328 aa12.08□□□□□ -0.48
COL7A1-203ENST00000459756 LAMTOR1Q6IAA8 161 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms