RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 IZUMO4Q1ZYL8 232 aa9.01□□□□□ -0.97
USP40-210ENST00000454354 AARDQ4LEZ3 155 aa9.01□□□□□ -0.97
USP40-210ENST00000454354 Q56UQ5 140 aa9.01□□□□□ -0.97
USP40-210ENST00000454354 PVRIGQ6DKI7 326 aa9.01□□□□□ -0.97
USP40-210ENST00000454354 FAAP20Q6NZ36 180 aa9.01□□□□□ -0.97
USP40-210ENST00000454354 OR52B4Q8NGK2 314 aa9.01□□□□□ -0.97
USP40-210ENST00000454354 OR4C16Q8NGL9 310 aa9.01□□□□□ -0.97
USP40-210ENST00000454354 ISOC1Q96CN7 298 aa9.01□□□□□ -0.97
USP40-210ENST00000454354 MISP3Q96FF7 219 aa9.01□□□□□ -0.97
USP40-210ENST00000454354 DIRAS2Q96HU8 199 aa9.01□□□□□ -0.97
USP40-210ENST00000454354 SPAG8Q99932 426 aaPredicted RBP9.01□□□□□ -0.97
USP40-210ENST00000454354 SLIRPQ9GZT3 109 aaKnown RBP9.01□□□□□ -0.97
USP40-210ENST00000454354 HIPK2Q9H2X6 1198 aa9.01□□□□□ -0.97
USP40-210ENST00000454354 A0A0G2JRQ6 117 aa9□□□□□ -0.97
USP40-210ENST00000454354 C15orf62A8K5M9 175 aa9□□□□□ -0.97
USP40-210ENST00000454354 DISC1C4P0D8 188 aa9□□□□□ -0.97
USP40-210ENST00000454354 TSPAN4O14817 238 aa9□□□□□ -0.97
USP40-210ENST00000454354 ST8SIA3O43173 380 aa9□□□□□ -0.97
USP40-210ENST00000454354 GSTZ1O43708 216 aaPredicted RBP9□□□□□ -0.97
USP40-210ENST00000454354 CDS2O95674 445 aa9□□□□□ -0.97
USP40-210ENST00000454354 MT-CO2P00403 227 aa9□□□□□ -0.97
USP40-210ENST00000454354 AKAIN1P0CW23 69 aa9□□□□□ -0.97
USP40-210ENST00000454354 LYL1P12980 280 aa9□□□□□ -0.97
USP40-210ENST00000454354 MFAP4P55083 255 aa9□□□□□ -0.97
USP40-210ENST00000454354 ERHP84090 104 aaKnown RBP9□□□□□ -0.97
USP40-210ENST00000454354 RELQ04864 619 aaPredicted RBP9□□□□□ -0.97
USP40-210ENST00000454354 TRIM16LQ309B1 348 aa9□□□□□ -0.97
USP40-210ENST00000454354 SP6Q3SY56 376 aa9□□□□□ -0.97
USP40-210ENST00000454354 RBPMS2Q6ZRY4 209 aaKnown RBP9□□□□□ -0.97
USP40-210ENST00000454354 FAM219AQ8IW50 185 aa9□□□□□ -0.97
USP40-210ENST00000454354 SLC35G3Q8N808 338 aa9□□□□□ -0.97
USP40-210ENST00000454354 UBAC2Q8NBM4 344 aa9□□□□□ -0.97
USP40-210ENST00000454354 OR10C1Q96KK4 312 aa9□□□□□ -0.97
USP40-210ENST00000454354 RTBDNQ9BSG5 229 aaPredicted RBP9□□□□□ -0.97
USP40-210ENST00000454354 NXF2Q9GZY0 626 aaKnown RBP9□□□□□ -0.97
USP40-210ENST00000454354 TMEM222Q9H0R3 208 aa9□□□□□ -0.97
USP40-210ENST00000454354 C14orf166Q9Y224 244 aaKnown RBP9□□□□□ -0.97
USP40-210ENST00000454354 ANKRD20A5PA0PJZ0 165 aa8.99□□□□□ -0.97
USP40-210ENST00000454354 NUPL2O15504 423 aaKnown RBP8.99□□□□□ -0.97
USP40-210ENST00000454354 NOL3O60936 208 aaKnown RBP8.99□□□□□ -0.97
USP40-210ENST00000454354 SPINK9Q5DT21 86 aa8.99□□□□□ -0.97
USP40-210ENST00000454354 LHFPL5Q8TAF8 219 aa8.99□□□□□ -0.97
USP40-210ENST00000454354 GLYATL2Q8WU03 294 aa8.99□□□□□ -0.97
USP40-210ENST00000454354 PRRT1Q99946 306 aa8.99□□□□□ -0.97
USP40-210ENST00000454354 SOSTQ9BQB4 213 aa8.99□□□□□ -0.97
USP40-210ENST00000454354 C6orf62Q9GZU0 229 aaPredicted RBP8.99□□□□□ -0.97
USP40-210ENST00000454354 NAA60Q9H7X0 242 aa8.99□□□□□ -0.97
USP40-210ENST00000454354 RETNQ9HD89 108 aa8.99□□□□□ -0.97
USP40-210ENST00000454354 RSL24D1Q9UHA3 163 aaKnown RBP8.99□□□□□ -0.97
USP40-210ENST00000454354 GPR132Q9UNW8 380 aa8.99□□□□□ -0.97
USP40-210ENST00000454354 CRYM-AS1A6NIL9 109 aa8.98□□□□□ -0.97
USP40-210ENST00000454354 CORTO00230 105 aa8.98□□□□□ -0.97
USP40-210ENST00000454354 OR5AC1P0C628 307 aa8.98□□□□□ -0.97
USP40-210ENST00000454354 RNASE2P10153 161 aaKnown RBP8.98□□□□□ -0.97
USP40-210ENST00000454354 SNCAP37840 140 aa8.98□□□□□ -0.97
USP40-210ENST00000454354 BSXQ3C1V8 233 aa8.98□□□□□ -0.97
USP40-210ENST00000454354 LAMTOR1Q6IAA8 161 aa8.98□□□□□ -0.97
USP40-210ENST00000454354 RBPMSQ93062 196 aaKnown RBP8.98□□□□□ -0.97
USP40-210ENST00000454354 RRNAD1Q96FB5 475 aaKnown RBP8.98□□□□□ -0.97
USP40-210ENST00000454354 PDCD10Q9BUL8 212 aa8.98□□□□□ -0.97
USP40-210ENST00000454354 C20orf24Q9BUV8 137 aa8.98□□□□□ -0.97
USP40-210ENST00000454354 IGHV3OR16-8A0A075B7F1 116 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 IGHV7-4-1A0A0J9YVY3 117 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 TEX13DA0A0J9YY54 714 aaPredicted RBP8.97□□□□□ -0.97
USP40-210ENST00000454354 GNG7O60262 68 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 IFNA17P01571 189 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 IGHV3-48P01763 117 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 TNFSF8P32971 234 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 NPBWR1P48145 328 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 HOXA1P49639 335 aaPredicted RBP8.97□□□□□ -0.97
USP40-210ENST00000454354 DHODHQ02127 395 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 ODF3L2Q3SX64 289 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 Q6ZRM9 215 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 OR51S1Q8NGJ8 323 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 OR52E5Q8NH55 327 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 PINX1Q96BK5 328 aaKnown RBP8.97□□□□□ -0.97
USP40-210ENST00000454354 FAM110AQ9BQ89 295 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 GGTLC1Q9BX51 225 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 SMPXQ9UHP9 88 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 TMEM56-RWDD3S4R434 201 aa8.97□□□□□ -0.97
USP40-210ENST00000454354 DNAH1Q9P2D7 4330 aa8.96□□□□□ -0.97
USP40-210ENST00000454354 LOC102724200A0A096LPH7 203 aaPredicted RBP8.96□□□□□ -0.98
USP40-210ENST00000454354 OR4C46A6NHA9 309 aa8.96□□□□□ -0.98
USP40-210ENST00000454354 CHEK1O14757 476 aa8.96□□□□□ -0.98
USP40-210ENST00000454354 ZNF207O43670 478 aaKnown RBP8.96□□□□□ -0.98
USP40-210ENST00000454354 ETV6P41212 452 aa8.96□□□□□ -0.98
USP40-210ENST00000454354 SUB1P53999 127 aaKnown RBP eCLIP8.96□□□□□ -0.98
USP40-210ENST00000454354 SPCS3P61009 180 aa8.96□□□□□ -0.98
USP40-210ENST00000454354 SELENOHQ8IZQ5 122 aaKnown RBP8.96□□□□□ -0.98
USP40-210ENST00000454354 TMEM116Q8NCL8 245 aa8.96□□□□□ -0.98
USP40-210ENST00000454354 DUSP18Q8NEJ0 188 aa8.96□□□□□ -0.98
USP40-210ENST00000454354 MCFD2Q8NI22 146 aa8.96□□□□□ -0.98
USP40-210ENST00000454354 RNASE11Q8TAA1 199 aaKnown RBP8.96□□□□□ -0.98
USP40-210ENST00000454354 TMEM230Q96A57 120 aa8.96□□□□□ -0.98
USP40-210ENST00000454354 GALNT14Q96FL9 552 aa8.96□□□□□ -0.98
USP40-210ENST00000454354 RHPN1-AS1Q9BWJ2 59 aa8.96□□□□□ -0.98
USP40-210ENST00000454354 ENY2Q9NPA8 101 aa8.96□□□□□ -0.98
USP40-210ENST00000454354 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.96□□□□□ -0.98
USP40-210ENST00000454354 SCP2D1Q9UJQ7 156 aa8.96□□□□□ -0.98
USP40-210ENST00000454354 PLECQ15149 4684 aaKnown RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms